Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AP000550.3-201ENST00000637734 379 ntBASIC5.92□□□□□ -1.46
MSH3P20585 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSH3P20585 AC022164.1-201ENST00000568767 2673 ntBASIC5.92□□□□□ -1.46
MSH3P20585 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSH3P20585 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.91□□□□□ -1.46
MSH3P20585 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
MSH3P20585 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSH3P20585 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.91□□□□□ -1.46
MSH3P20585 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
MSH3P20585 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.91□□□□□ -1.46
MSH3P20585 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
MSH3P20585 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
MSH3P20585 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSH3P20585 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.91□□□□□ -1.46
MSH3P20585 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.91□□□□□ -1.46
MSH3P20585 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.91□□□□□ -1.46
MSH3P20585 RSL24D1P2-201ENST00000445584 366 ntBASIC5.91□□□□□ -1.46
MSH3P20585 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.91□□□□□ -1.46
MSH3P20585 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSH3P20585 OR52E7P-201ENST00000452394 933 ntBASIC5.91□□□□□ -1.46
MSH3P20585 SDC4P-201ENST00000453285 601 ntBASIC5.91□□□□□ -1.46
MSH3P20585 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.91□□□□□ -1.46
MSH3P20585 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.91□□□□□ -1.46
MSH3P20585 SETP21-201ENST00000514799 892 ntBASIC5.91□□□□□ -1.46
MSH3P20585 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
MSH3P20585 OR4A42P-201ENST00000531397 938 ntBASIC5.91□□□□□ -1.46
MSH3P20585 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.91□□□□□ -1.46
MSH3P20585 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.91□□□□□ -1.46
MSH3P20585 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.91□□□□□ -1.46
MSH3P20585 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.91□□□□□ -1.46
MSH3P20585 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.91□□□□□ -1.46
MSH3P20585 AL499605.1-201ENST00000604628 403 ntBASIC5.91□□□□□ -1.46
MSH3P20585 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.91□□□□□ -1.46
MSH3P20585 AC108673.3-201ENST00000609183 335 ntBASIC5.91□□□□□ -1.46
MSH3P20585 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.91□□□□□ -1.46
MSH3P20585 AC022960.2-201ENST00000616300 666 ntBASIC5.91□□□□□ -1.46
MSH3P20585 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
MSH3P20585 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.91□□□□□ -1.46
MSH3P20585 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSH3P20585 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.91□□□□□ -1.46
MSH3P20585 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.91□□□□□ -1.46
MSH3P20585 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.91□□□□□ -1.46
MSH3P20585 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSH3P20585 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.9□□□□□ -1.46
MSH3P20585 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.9□□□□□ -1.46
MSH3P20585 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.9□□□□□ -1.46
MSH3P20585 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
MSH3P20585 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.9□□□□□ -1.46
MSH3P20585 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 RNFT1P3-201ENST00000340898 1052 ntBASIC5.9□□□□□ -1.46
MSH3P20585 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
MSH3P20585 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
MSH3P20585 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.9□□□□□ -1.46
MSH3P20585 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AC092651.1-201ENST00000426110 312 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AC099677.3-201ENST00000427081 395 ntBASIC5.9□□□□□ -1.46
MSH3P20585 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.9□□□□□ -1.46
MSH3P20585 AC073410.1-201ENST00000435125 589 ntBASIC5.9□□□□□ -1.46
MSH3P20585 RPS7P3-201ENST00000443360 580 ntBASIC5.9□□□□□ -1.46
MSH3P20585 BMS1P10-201ENST00000443754 1120 ntBASIC5.9□□□□□ -1.46
MSH3P20585 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.9□□□□□ -1.46
MSH3P20585 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.9□□□□□ -1.46
MSH3P20585 CST12P-201ENST00000457644 362 ntBASIC5.9□□□□□ -1.46
MSH3P20585 RN7SL269P-201ENST00000467795 305 ntBASIC5.9□□□□□ -1.46
MSH3P20585 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.46
MSH3P20585 PFN1P8-201ENST00000497012 543 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AC090058.1-201ENST00000498788 435 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.9□□□□□ -1.46
MSH3P20585 RN7SKP288-201ENST00000516227 268 ntBASIC5.9□□□□□ -1.46
MSH3P20585 SCARNA18.1-201ENST00000516330 83 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.9□□□□□ -1.46
MSH3P20585 AC244502.2-201ENST00000543361 851 ntBASIC5.9□□□□□ -1.46
MSH3P20585 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.9□□□□□ -1.46
MSH3P20585 AC090826.1-203ENST00000569235 490 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AL049840.6-201ENST00000604583 345 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AC100814.1-201ENST00000606963 623 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.9□□□□□ -1.46
MSH3P20585 AC129778.1-202ENST00000623812 261 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AL591379.1-207ENST00000635982 261 ntBASIC5.9□□□□□ -1.46
MSH3P20585 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.9□□□□□ -1.46
MSH3P20585 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSH3P20585 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
MSH3P20585 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH3P20585 AC005261.2-201ENST00000593427 4258 ntBASIC5.9□□□□□ -1.47
MSH3P20585 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms