Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC107993.1-201ENST00000591343 684 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AP001267.4-201ENST00000602598 545 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 MIR7109-201ENST00000613748 65 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC114876.1-201ENST00000490962 1366 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 NLRP3P1-201ENST00000622303 1785 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AP005435.3-201ENST00000531260 3198 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 Z95114.1-201ENST00000624264 14574 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC016745.2-201ENST00000608834 3443 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AL513548.1-201ENST00000562904 1724 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC104964.3-201ENST00000606115 2860 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 MSL3P1-202ENST00000440028 1468 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 PTCD2P2-201ENST00000415579 1095 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 EMC3-AS1-205ENST00000438698 534 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 TIMM8BP2-201ENST00000445940 251 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC073072.2-201ENST00000447425 348 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 OR52E7P-201ENST00000452394 933 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 OR7E22P-201ENST00000478335 1035 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 RPL12P31-201ENST00000478433 450 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 RPS26P24-201ENST00000497656 331 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC122718.2-201ENST00000505325 591 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 RN7SKP288-201ENST00000516227 268 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 NPM1P42-201ENST00000560329 862 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 NPM1P45-201ENST00000583151 559 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 VN1R81P-201ENST00000602085 372 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AL713998.2-201ENST00000604538 1198 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC007620.3-201ENST00000608131 497 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC096586.2-201ENST00000610260 441 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 MIR6806-201ENST00000622141 64 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 AC000095.2-202ENST00000637415 154 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.22□□□□□ -1.57
NKX3-1Q99801 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
NKX3-1Q99801 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NKX3-1Q99801 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.57
NKX3-1Q99801 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
NKX3-1Q99801 AC116158.1-201ENST00000560231 2129 ntBASIC5.21□□□□□ -1.57
NKX3-1Q99801 AC005224.3-201ENST00000584683 2140 ntBASIC5.21□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms