Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC4.31□□□□□ -1.72
FOXA3P55318 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 RN7SL413P-201ENST00000482700 297 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 RPL34P33-201ENST00000486062 334 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 ENPP7P11-201ENST00000505915 627 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 AC098976.1-201ENST00000513014 541 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 FTH1P11-201ENST00000517577 551 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.31□□□□□ -1.72
FOXA3P55318 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 AL356608.1-201ENST00000610034 820 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 uc_338.33-201ENST00000614988 170 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 MIR6849-201ENST00000618543 69 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 MBD5-221ENST00000637159 902 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 AL034549.2-201ENST00000618285 3373 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.3□□□□□ -1.72
FOXA3P55318 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 HSPA8P14-201ENST00000552265 1805 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.3□□□□□ -1.72
FOXA3P55318 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 AC004023.1-201ENST00000561473 1744 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AL603750.1-201ENST00000624216 1717 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 FBXL21-201ENST00000297158 1305 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AC117409.1-201ENST00000470499 1310 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 OR4F13P-202ENST00000560066 2054 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 RPL35AP31-201ENST00000418340 337 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 GRPEL2P2-201ENST00000421856 670 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AL672212.1-201ENST00000422246 400 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA3P55318 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA3P55318 PCBP2P1-201ENST00000437262 977 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AC019185.3-201ENST00000438805 323 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 TRIM60P16-201ENST00000444048 694 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 SEPHS1P4-201ENST00000446112 1176 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 PCMTD1P3-201ENST00000451824 472 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 MEMO1P4-201ENST00000453590 386 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AC004129.2-201ENST00000457229 287 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.3□□□□□ -1.72
FOXA3P55318 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 OR7E22P-201ENST00000478335 1035 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 USP9YP2-201ENST00000504503 1000 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 USP9YP1-201ENST00000513521 1002 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.3□□□□□ -1.72
FOXA3P55318 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 IGHVII-49-1-201ENST00000521760 224 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 CSAG2-201ENST00000535353 237 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
FOXA3P55318 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA3P55318 OR4C49P-201ENST00000563891 900 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 MIR4258-201ENST00000580920 91 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AF186192.2-204ENST00000581667 524 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC4.3□□□□□ -1.72
FOXA3P55318 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 FAM72A-208ENST00000607379 1139 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 MIR6731-201ENST00000614863 72 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 FRG1EP-201ENST00000634469 770 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 AF287957.1-201ENST00000607368 1595 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
FOXA3P55318 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
FOXA3P55318 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 ZNF710-AS1-202ENST00000620791 2133 ntBASIC4.3□□□□□ -1.72
FOXA3P55318 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
FOXA3P55318 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
FOXA3P55318 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.29□□□□□ -1.72
FOXA3P55318 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA3P55318 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
FOXA3P55318 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
FOXA3P55318 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms