Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC022447.3-201ENST00000506865 495 ntBASIC7.29□□□□□ -1.24
MSX1P28360 NAF1-205ENST00000509434 385 ntTSL 3 BASIC7.29□□□□□ -1.24
MSX1P28360 AC104108.1-201ENST00000509930 412 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC108120.2-201ENST00000512973 294 ntBASIC7.29□□□□□ -1.24
MSX1P28360 DCSTAMP-203ENST00000517991 949 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 OPRK1-204ENST00000524278 1195 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 AC022690.1-201ENST00000526681 550 ntBASIC7.29□□□□□ -1.24
MSX1P28360 OR4A11P-201ENST00000529557 906 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC087276.1-201ENST00000529659 480 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC009729.1-201ENST00000548873 1133 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.29□□□□□ -1.24
MSX1P28360 OR4N1P-201ENST00000554847 949 ntBASIC7.29□□□□□ -1.24
MSX1P28360 PSMA3P-201ENST00000555485 635 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AL121821.2-201ENST00000556081 394 ntBASIC7.29□□□□□ -1.24
MSX1P28360 GLUD1P2-201ENST00000583339 201 ntBASIC7.29□□□□□ -1.24
MSX1P28360 MIR4786-201ENST00000583954 80 ntBASIC7.29□□□□□ -1.24
MSX1P28360 GLUD1P8-201ENST00000585063 203 ntBASIC7.29□□□□□ -1.24
MSX1P28360 RPL23AP77-201ENST00000588044 463 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.29□□□□□ -1.24
MSX1P28360 AC068020.1-201ENST00000594215 661 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 AP001429.1-201ENST00000602568 530 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC130352.1-201ENST00000602979 661 ntBASIC7.29□□□□□ -1.24
MSX1P28360 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 MEMO1P5-201ENST00000604810 406 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC7.29□□□□□ -1.24
MSX1P28360 RNVU1-19-201ENST00000613023 167 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC124319.3-201ENST00000616832 526 ntBASIC7.29□□□□□ -1.24
MSX1P28360 IL13-206ENST00000617259 498 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 AP003789.1-201ENST00000617737 605 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC068234.2-201ENST00000619646 522 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC114546.4-201ENST00000624413 369 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AP003400.3-201ENST00000624904 346 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC138305.3-201ENST00000624988 240 ntBASIC7.29□□□□□ -1.24
MSX1P28360 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 MIR3662-201ENST00000637030 95 ntBASIC7.29□□□□□ -1.24
MSX1P28360 GABRP-203ENST00000518525 3576 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC7.29□□□□□ -1.24
MSX1P28360 A2ML1-205ENST00000539547 3460 ntTSL 2 BASIC7.29□□□□□ -1.24
MSX1P28360 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC7.29□□□□□ -1.24
MSX1P28360 DHX35-201ENST00000252011 3325 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 CCDC190-203ENST00000367912 2605 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 RAD51B-212ENST00000488612 1550 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 SORCS1-202ENST00000344440 3009 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 STX18-AS1-206ENST00000608184 3047 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 MAPK10-204ENST00000395157 2665 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 SLC7A8-206ENST00000469263 3557 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 LINC02111-201ENST00000505158 2312 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 MAGT1-205ENST00000618282 2788 ntAPPRIS ALT1 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
MSX1P28360 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 DCAF6-202ENST00000367840 3349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 TMEM99-204ENST00000622451 2073 ntAPPRIS P2 TSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 BRCC3-203ENST00000369459 2641 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 GTF2H1-210ENST00000530496 1700 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
MSX1P28360 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
MSX1P28360 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
MSX1P28360 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
MSX1P28360 RNU5E-5P-201ENST00000365379 116 ntBASIC7.28□□□□□ -1.24
MSX1P28360 MIR301B-201ENST00000390813 78 ntBASIC7.28□□□□□ -1.24
MSX1P28360 RNU2-5P-201ENST00000410533 180 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC068138.1-201ENST00000412635 217 ntBASIC7.28□□□□□ -1.24
MSX1P28360 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 AC017104.2-201ENST00000417000 321 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC109638.1-201ENST00000417406 326 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AKR1B15-201ENST00000423958 1035 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
MSX1P28360 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
MSX1P28360 AL353052.1-201ENST00000428673 818 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 PYHIN5P-201ENST00000431627 723 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 AL451074.3-201ENST00000437709 472 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AL353754.1-201ENST00000440219 340 ntBASIC7.28□□□□□ -1.24
MSX1P28360 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC7.28□□□□□ -1.24
MSX1P28360 PRMT8-203ENST00000452611 1204 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
MSX1P28360 AC007879.2-201ENST00000454444 551 ntTSL 4 BASIC7.28□□□□□ -1.24
MSX1P28360 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
MSX1P28360 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC7.28□□□□□ -1.24
MSX1P28360 PDPN-205ENST00000487038 607 ntTSL 2 BASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms