Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 AC090220.1-201ENST00000593078 1699 ntBASIC5.94□□□□□ -1.46
MSH3P20585 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSH3P20585 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
MSH3P20585 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 AL121839.2-201ENST00000565058 6943 ntBASIC5.94□□□□□ -1.46
MSH3P20585 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.94□□□□□ -1.46
MSH3P20585 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.93□□□□□ -1.46
MSH3P20585 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
MSH3P20585 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 AC083837.1-201ENST00000565297 2994 ntBASIC5.93□□□□□ -1.46
MSH3P20585 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
MSH3P20585 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 OR7E156P-201ENST00000400303 464 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.93□□□□□ -1.46
MSH3P20585 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 AC244033.1-201ENST00000426826 870 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AC115283.1-201ENST00000427353 400 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.93□□□□□ -1.46
MSH3P20585 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 CUBNP2-201ENST00000443534 1139 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 snoU13.29-201ENST00000459370 104 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AP000926.3-201ENST00000497201 299 ntBASIC5.93□□□□□ -1.46
MSH3P20585 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.93□□□□□ -1.46
MSH3P20585 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.93□□□□□ -1.46
MSH3P20585 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.93□□□□□ -1.46
MSH3P20585 RNU6-362P-201ENST00000516736 90 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.93□□□□□ -1.46
MSH3P20585 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.93□□□□□ -1.46
MSH3P20585 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 AC027369.2-201ENST00000528030 440 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AC079905.1-201ENST00000549280 475 ntBASIC5.93□□□□□ -1.46
MSH3P20585 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.93□□□□□ -1.46
MSH3P20585 NF1P10-201ENST00000613227 742 ntBASIC5.93□□□□□ -1.46
MSH3P20585 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
MSH3P20585 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSH3P20585 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
MSH3P20585 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.93□□□□□ -1.46
MSH3P20585 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
MSH3P20585 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSH3P20585 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.92□□□□□ -1.46
MSH3P20585 SNORA81-201ENST00000408493 178 ntBASIC5.92□□□□□ -1.46
MSH3P20585 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.92□□□□□ -1.46
MSH3P20585 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.92□□□□□ -1.46
MSH3P20585 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.92□□□□□ -1.46
MSH3P20585 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.92□□□□□ -1.46
MSH3P20585 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.92□□□□□ -1.46
MSH3P20585 TUBB4BP6-201ENST00000437576 479 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AC023245.1-201ENST00000468501 517 ntBASIC5.92□□□□□ -1.46
MSH3P20585 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AC008629.2-201ENST00000503783 483 ntBASIC5.92□□□□□ -1.46
MSH3P20585 RNA5SP340-201ENST00000517132 107 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.92□□□□□ -1.46
MSH3P20585 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC5.92□□□□□ -1.46
MSH3P20585 WBP1LP3-201ENST00000523033 208 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.92□□□□□ -1.46
MSH3P20585 BCAS2P1-201ENST00000528022 632 ntBASIC5.92□□□□□ -1.46
MSH3P20585 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.92□□□□□ -1.46
MSH3P20585 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSH3P20585 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.92□□□□□ -1.46
MSH3P20585 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.92□□□□□ -1.46
MSH3P20585 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.92□□□□□ -1.46
MSH3P20585 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.92□□□□□ -1.46
MSH3P20585 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.92□□□□□ -1.46
MSH3P20585 AC134669.1-201ENST00000581275 672 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AC005244.1-201ENST00000582566 339 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AC079315.1-201ENST00000602952 623 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AL021918.2-201ENST00000613415 194 ntBASIC5.92□□□□□ -1.46
MSH3P20585 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AL136228.1-201ENST00000622221 319 ntBASIC5.92□□□□□ -1.46
MSH3P20585 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms