Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.49□□□□□ -1.21
COL3A1P02461 AL133481.2-203ENST00000607558 139 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 AC022960.2-201ENST00000616300 666 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL3A1P02461 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL3A1P02461 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 AC089998.1-201ENST00000548575 3141 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC7.49□□□□□ -1.21
COL3A1P02461 AC232271.1-201ENST00000602455 2715 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC7.49□□□□□ -1.21
COL3A1P02461 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC7.49□□□□□ -1.21
COL3A1P02461 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 ALB-220ENST00000621628 1606 ntTSL 5 BASIC7.49□□□□□ -1.21
COL3A1P02461 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC7.49□□□□□ -1.21
COL3A1P02461 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 GAPDHP42-201ENST00000406848 981 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 AC007161.1-204ENST00000423039 460 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC7.49□□□□□ -1.21
COL3A1P02461 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 RPS26P41-201ENST00000450370 284 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.49□□□□□ -1.21
COL3A1P02461 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC7.49□□□□□ -1.21
COL3A1P02461 AL049872.1-201ENST00000556323 322 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC7.49□□□□□ -1.21
COL3A1P02461 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 AL157762.1-201ENST00000619612 415 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 AC006213.5-201ENST00000619673 288 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC7.48□□□□□ -1.21
COL3A1P02461 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
COL3A1P02461 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 HSPD1P7-201ENST00000447985 1686 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.48□□□□□ -1.21
COL3A1P02461 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.48□□□□□ -1.21
COL3A1P02461 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
COL3A1P02461 RNU1-136P-201ENST00000384181 164 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 RNU6-171P-201ENST00000384354 107 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 RMRPP5-201ENST00000411156 267 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.48□□□□□ -1.21
COL3A1P02461 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 RN7SL547P-201ENST00000490793 290 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC7.48□□□□□ -1.21
COL3A1P02461 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
COL3A1P02461 RN7SKP253-201ENST00000516424 309 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC7.48□□□□□ -1.21
COL3A1P02461 AC026616.1-201ENST00000523157 525 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.48□□□□□ -1.21
COL3A1P02461 AC137627.1-201ENST00000545761 289 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC7.48□□□□□ -1.21
COL3A1P02461 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.48□□□□□ -1.21
COL3A1P02461 AC079395.2-201ENST00000610982 737 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 AC079414.3-201ENST00000612986 1090 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 MIR8080-201ENST00000622224 89 ntBASIC7.48□□□□□ -1.21
COL3A1P02461 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC7.48□□□□□ -1.21
COL3A1P02461 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC7.48□□□□□ -1.21
COL3A1P02461 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.48□□□□□ -1.21
COL3A1P02461 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL3A1P02461 AP004289.1-201ENST00000436307 2205 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 LINC02035-201ENST00000610128 5476 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 AL662795.2-201ENST00000624252 3706 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 MIR133B-201ENST00000362210 119 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC7.47□□□□□ -1.21
COL3A1P02461 BPHL-201ENST00000380368 797 ntTSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 DNAJA1P3-201ENST00000399417 1194 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL3A1P02461 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC7.47□□□□□ -1.21
COL3A1P02461 AC007386.1-201ENST00000455212 582 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 CSNK1A1P3-201ENST00000504105 330 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 AC109481.1-201ENST00000509173 282 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 SSX6-203ENST00000509958 336 ntTSL 3 BASIC7.47□□□□□ -1.21
COL3A1P02461 IGKV2-18-201ENST00000522607 343 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC7.47□□□□□ -1.21
COL3A1P02461 AGGF1P7-201ENST00000562369 913 ntBASIC7.47□□□□□ -1.21
COL3A1P02461 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC7.47□□□□□ -1.21
COL3A1P02461 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms