Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 H2AFZP6-201ENST00000444403 394 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC017099.1-201ENST00000448261 1028 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC073850.1-201ENST00000449243 255 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC089999.1-201ENST00000460336 374 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AP001804.1-201ENST00000526868 919 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC022404.1-201ENST00000555320 273 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 DPPA3P2-202ENST00000557188 1219 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AP003115.1-201ENST00000569849 463 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AL359704.2-201ENST00000604335 521 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC091193.1-201ENST00000604640 448 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 OR7M1P-201ENST00000608946 533 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AL445647.2-201ENST00000615170 130 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC005277.2-201ENST00000617898 390 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AL590410.1-201ENST00000617925 333 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC004808.2-201ENST00000627965 773 ntBASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.05□□□□□ -1.44
COL28A1Q2UY09 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC009120.2-204ENST00000621548 2032 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 PARP4P1-201ENST00000435945 2337 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC007342.5-201ENST00000571340 2142 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 OR2M1P-201ENST00000318104 951 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 TMSB4XP2-201ENST00000335179 210 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 U3.7-201ENST00000363668 216 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 RN7SKP160-201ENST00000363804 340 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 RPS3AP2-201ENST00000407190 754 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 U3.43-201ENST00000410734 213 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 RPL21P133-201ENST00000443666 476 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL590004.3-202ENST00000445883 451 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 PFN1P6-201ENST00000476786 399 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AP000662.1-201ENST00000530952 487 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 FAM60CP-201ENST00000591086 664 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL953862.2-201ENST00000603089 820 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL356986.1-201ENST00000604085 341 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL031658.2-201ENST00000616850 651 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC009032.1-201ENST00000617574 431 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC005393.1-201ENST00000617916 584 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC012653.2-201ENST00000621880 420 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AC018692.2-201ENST00000624130 348 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.04□□□□□ -1.44
COL28A1Q2UY09 LINC02495-203ENST00000636704 242 ntBASIC6.04□□□□□ -1.44
COL28A1Q2UY09 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms