Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
FOXA1P55317 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
FOXA1P55317 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
FOXA1P55317 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.55□□□□□ -1.52
FOXA1P55317 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
FOXA1P55317 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
FOXA1P55317 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.55□□□□□ -1.52
FOXA1P55317 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
FOXA1P55317 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
FOXA1P55317 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 RNA5SP500-201ENST00000364486 119 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.55□□□□□ -1.52
FOXA1P55317 RPL7P58-201ENST00000402913 758 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 MRPL53P1-201ENST00000414323 319 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.55□□□□□ -1.52
FOXA1P55317 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.55□□□□□ -1.52
FOXA1P55317 MED28P3-201ENST00000444288 531 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.55□□□□□ -1.52
FOXA1P55317 CST12P-201ENST00000457644 362 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.55□□□□□ -1.52
FOXA1P55317 RN7SL193P-201ENST00000491708 276 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.55□□□□□ -1.52
FOXA1P55317 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.55□□□□□ -1.52
FOXA1P55317 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.55□□□□□ -1.52
FOXA1P55317 LDHAP1-201ENST00000509421 992 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 PRMT5P1-201ENST00000514351 598 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.55□□□□□ -1.52
FOXA1P55317 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.55□□□□□ -1.52
FOXA1P55317 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.55□□□□□ -1.52
FOXA1P55317 AC006530.1-201ENST00000555980 571 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 RPA2P1-201ENST00000556557 721 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 AC096996.1-201ENST00000563813 325 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.55□□□□□ -1.52
FOXA1P55317 AC048341.3-201ENST00000619323 491 ntBASIC5.55□□□□□ -1.52
FOXA1P55317 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.55□□□□□ -1.52
FOXA1P55317 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
FOXA1P55317 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
FOXA1P55317 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.54□□□□□ -1.52
FOXA1P55317 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.54□□□□□ -1.52
FOXA1P55317 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
FOXA1P55317 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 RNA5SP232-201ENST00000364144 119 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
FOXA1P55317 AC005042.1-201ENST00000393397 800 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 AL359885.1-201ENST00000415786 903 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 OR10T1P-201ENST00000424327 947 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.54□□□□□ -1.52
FOXA1P55317 ATP5LP2-201ENST00000440646 311 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.54□□□□□ -1.52
FOXA1P55317 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.54□□□□□ -1.52
FOXA1P55317 AC021006.1-201ENST00000489849 553 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 RPS17P5-201ENST00000498293 408 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.54□□□□□ -1.52
FOXA1P55317 HSD3BP3-201ENST00000514706 994 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.54□□□□□ -1.52
FOXA1P55317 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.54□□□□□ -1.52
FOXA1P55317 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 AC138207.8-204ENST00000579588 527 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.54□□□□□ -1.52
FOXA1P55317 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.54□□□□□ -1.52
FOXA1P55317 NANOGP3-201ENST00000605855 286 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.54□□□□□ -1.52
FOXA1P55317 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.54□□□□□ -1.52
FOXA1P55317 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.54□□□□□ -1.52
FOXA1P55317 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.54□□□□□ -1.52
FOXA1P55317 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
FOXA1P55317 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.54□□□□□ -1.52
FOXA1P55317 AC006206.1-201ENST00000544842 3387 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 ADAM24P-201ENST00000398655 2101 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 AC027088.4-201ENST00000611559 1947 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
FOXA1P55317 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
FOXA1P55317 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms