Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TCL6_3.1-201ENST00000619064 137 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 AC130304.1-201ENST00000622942 2385 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.92□□□□□ -1.3
BRCA1P38398 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.92□□□□□ -1.3
BRCA1P38398 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.92□□□□□ -1.3
BRCA1P38398 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
BRCA1P38398 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
BRCA1P38398 AL136531.3-201ENST00000624378 3658 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
BRCA1P38398 RNU1-43P-201ENST00000365052 165 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
BRCA1P38398 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC6.92□□□□□ -1.3
BRCA1P38398 AC096775.1-201ENST00000437724 448 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.92□□□□□ -1.3
BRCA1P38398 TRY2P-201ENST00000448860 689 ntBASIC6.92□□□□□ -1.3
BRCA1P38398 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.92□□□□□ -1.3
BRCA1P38398 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.92□□□□□ -1.3
BRCA1P38398 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
BRCA1P38398 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
BRCA1P38398 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
BRCA1P38398 UGT2B27P-201ENST00000505092 1620 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
BRCA1P38398 PARP4P1-201ENST00000435945 2337 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 AC018765.1-201ENST00000623357 3446 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
BRCA1P38398 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
BRCA1P38398 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.91□□□□□ -1.3
BRCA1P38398 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC6.91□□□□□ -1.3
BRCA1P38398 THAP12P9-201ENST00000503971 2360 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.91□□□□□ -1.3
BRCA1P38398 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
BRCA1P38398 SRSF1P1-201ENST00000424058 520 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.91□□□□□ -1.3
BRCA1P38398 FAM96AP1-201ENST00000430879 482 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC6.91□□□□□ -1.3
BRCA1P38398 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
BRCA1P38398 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.91□□□□□ -1.3
BRCA1P38398 AL022319.1-201ENST00000458183 1167 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC6.91□□□□□ -1.3
BRCA1P38398 MIR6758-201ENST00000620653 63 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.91□□□□□ -1.3
BRCA1P38398 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
BRCA1P38398 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
BRCA1P38398 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
BRCA1P38398 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.91□□□□□ -1.3
BRCA1P38398 AC092821.2-201ENST00000545710 2042 ntBASIC6.91□□□□□ -1.3
BRCA1P38398 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.91□□□□□ -1.3
BRCA1P38398 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
BRCA1P38398 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
BRCA1P38398 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
BRCA1P38398 AC010132.2-201ENST00000295493 1043 ntBASIC6.9□□□□□ -1.3
BRCA1P38398 RNU1-24P-201ENST00000364285 165 ntBASIC6.9□□□□□ -1.3
BRCA1P38398 RNA5SP505-201ENST00000364748 108 ntBASIC6.9□□□□□ -1.3
BRCA1P38398 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.9□□□□□ -1.3
BRCA1P38398 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.9□□□□□ -1.3
BRCA1P38398 AC105399.1-202ENST00000447303 205 ntBASIC6.9□□□□□ -1.3
BRCA1P38398 AL356981.1-201ENST00000454879 684 ntBASIC6.9□□□□□ -1.3
BRCA1P38398 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.9□□□□□ -1.3
BRCA1P38398 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.9□□□□□ -1.3
BRCA1P38398 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC6.9□□□□□ -1.3
BRCA1P38398 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
BRCA1P38398 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.9□□□□□ -1.3
BRCA1P38398 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
BRCA1P38398 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC6.9□□□□□ -1.3
BRCA1P38398 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
BRCA1P38398 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC6.9□□□□□ -1.31
BRCA1P38398 ZNF733P-202ENST00000444809 1573 ntBASIC6.9□□□□□ -1.31
BRCA1P38398 AL391262.1-201ENST00000556558 1992 ntBASIC6.9□□□□□ -1.31
BRCA1P38398 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC6.9□□□□□ -1.31
BRCA1P38398 AC008171.1-201ENST00000395058 200 ntBASIC6.9□□□□□ -1.31
BRCA1P38398 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.9□□□□□ -1.31
BRCA1P38398 AC245028.1-201ENST00000423259 256 ntBASIC6.9□□□□□ -1.31
BRCA1P38398 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.9□□□□□ -1.31
BRCA1P38398 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC6.9□□□□□ -1.31
BRCA1P38398 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
BRCA1P38398 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.9□□□□□ -1.31
BRCA1P38398 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.9□□□□□ -1.31
BRCA1P38398 AC004890.3-201ENST00000605566 1095 ntBASIC6.9□□□□□ -1.31
BRCA1P38398 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.9□□□□□ -1.31
BRCA1P38398 AC130448.2-201ENST00000624082 374 ntBASIC6.9□□□□□ -1.31
BRCA1P38398 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
BRCA1P38398 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 AC008957.3-201ENST00000624112 2242 ntBASIC6.89□□□□□ -1.31
BRCA1P38398 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
BRCA1P38398 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.89□□□□□ -1.31
BRCA1P38398 AL133482.1-201ENST00000415988 498 ntBASIC6.89□□□□□ -1.31
BRCA1P38398 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms