Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
HOXC9P31274 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
HOXC9P31274 LINC01963-201ENST00000562038 3148 ntBASIC7.65□□□□□ -1.19
HOXC9P31274 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
HOXC9P31274 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
HOXC9P31274 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 MIR937-201ENST00000401271 86 ntBASIC7.64□□□□□ -1.19
HOXC9P31274 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.64□□□□□ -1.19
HOXC9P31274 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC7.64□□□□□ -1.19
HOXC9P31274 VDAC2P4-201ENST00000452925 711 ntBASIC7.64□□□□□ -1.19
HOXC9P31274 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.64□□□□□ -1.19
HOXC9P31274 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.64□□□□□ -1.19
HOXC9P31274 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC7.64□□□□□ -1.19
HOXC9P31274 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC7.64□□□□□ -1.19
HOXC9P31274 AC126615.2-201ENST00000553003 515 ntBASIC7.64□□□□□ -1.19
HOXC9P31274 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC7.64□□□□□ -1.19
HOXC9P31274 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC7.64□□□□□ -1.19
HOXC9P31274 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.64□□□□□ -1.19
HOXC9P31274 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC7.64□□□□□ -1.19
HOXC9P31274 AC136428.4-201ENST00000634254 1155 ntBASIC7.64□□□□□ -1.19
HOXC9P31274 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
HOXC9P31274 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.64□□□□□ -1.19
HOXC9P31274 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
HOXC9P31274 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.64□□□□□ -1.19
HOXC9P31274 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
HOXC9P31274 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
HOXC9P31274 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
HOXC9P31274 AC117409.1-201ENST00000470499 1310 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.63□□□□□ -1.19
HOXC9P31274 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
HOXC9P31274 MIR130A-201ENST00000385274 89 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
HOXC9P31274 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.63□□□□□ -1.19
HOXC9P31274 HSPE1P27-201ENST00000430808 296 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 CYCSP12-201ENST00000437729 300 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 CNOT7P2-201ENST00000441051 832 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 AC005532.2-201ENST00000467154 373 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 AC006539.1-201ENST00000481419 501 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 AC093270.2-201ENST00000486157 792 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 AC090638.1-201ENST00000498296 909 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 AC105384.2-201ENST00000508433 640 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 AC021146.10-201ENST00000515628 706 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.63□□□□□ -1.19
HOXC9P31274 AC090424.1-201ENST00000535243 736 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC7.63□□□□□ -1.19
HOXC9P31274 AC044860.2-201ENST00000561005 179 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 MIR4301-201ENST00000577203 66 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC7.63□□□□□ -1.19
HOXC9P31274 AL137246.2-201ENST00000613439 662 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 AP001885.1-201ENST00000621658 558 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.63□□□□□ -1.19
HOXC9P31274 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC7.63□□□□□ -1.19
HOXC9P31274 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 CPS1-IT1-201ENST00000628368 2306 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC7.63□□□□□ -1.19
HOXC9P31274 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 AC022034.1-201ENST00000512867 2156 ntBASIC7.63□□□□□ -1.19
HOXC9P31274 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
HOXC9P31274 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 AL592429.1-201ENST00000403909 1473 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
HOXC9P31274 AC087516.1-201ENST00000561236 2428 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
HOXC9P31274 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
HOXC9P31274 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 AC061975.7-201ENST00000592016 2692 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7.62□□□□□ -1.19
HOXC9P31274 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.62□□□□□ -1.19
HOXC9P31274 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HOXC9P31274 GAPDHP24-201ENST00000328713 983 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
HOXC9P31274 RPS17P17-201ENST00000419392 409 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC7.62□□□□□ -1.19
HOXC9P31274 NPM1P22-201ENST00000427761 952 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 AC096775.1-201ENST00000437724 448 ntBASIC7.62□□□□□ -1.19
HOXC9P31274 AC006335.2-201ENST00000437993 330 ntBASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms