Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.04□□□□□ -1.28
SMARCA1P28370 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC7.04□□□□□ -1.28
SMARCA1P28370 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AP005119.1-201ENST00000580956 292 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC7.04□□□□□ -1.28
SMARCA1P28370 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC7.04□□□□□ -1.28
SMARCA1P28370 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC7.04□□□□□ -1.28
SMARCA1P28370 OR4H6P-202ENST00000603819 340 ntBASIC7.04□□□□□ -1.28
SMARCA1P28370 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC7.04□□□□□ -1.28
SMARCA1P28370 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC7.04□□□□□ -1.28
SMARCA1P28370 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMARCA1P28370 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.04□□□□□ -1.28
SMARCA1P28370 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC7.04□□□□□ -1.28
SMARCA1P28370 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
SMARCA1P28370 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC7.03□□□□□ -1.28
SMARCA1P28370 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 RBPJP7-201ENST00000442803 1447 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 RBPJP5-201ENST00000449433 1447 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
SMARCA1P28370 LYARP1-201ENST00000436977 1501 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 MTCO1P28-201ENST00000574177 1528 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 RNA5SP433-201ENST00000364491 114 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AL358178.1-201ENST00000407698 397 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.03□□□□□ -1.28
SMARCA1P28370 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.03□□□□□ -1.28
SMARCA1P28370 RPL12P43-201ENST00000420608 499 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC7.03□□□□□ -1.28
SMARCA1P28370 CCNB1IP1P1-201ENST00000428976 839 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 UBE2V1P6-201ENST00000430840 422 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AL606490.8-201ENST00000441624 319 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC005077.1-201ENST00000449226 375 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC016027.4-201ENST00000450866 277 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 RN7SL352P-201ENST00000466002 277 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AP002884.1-201ENST00000479691 655 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AL035690.1-201ENST00000490892 383 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 FTH1P8-201ENST00000498161 514 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AL158068.1-201ENST00000506116 616 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC025768.1-201ENST00000510057 267 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC7.03□□□□□ -1.28
SMARCA1P28370 OR56A7P-201ENST00000524865 941 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC7.03□□□□□ -1.28
SMARCA1P28370 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC7.03□□□□□ -1.28
SMARCA1P28370 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC7.03□□□□□ -1.28
SMARCA1P28370 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.03□□□□□ -1.28
SMARCA1P28370 CYCSP38-201ENST00000559840 322 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC7.03□□□□□ -1.28
SMARCA1P28370 LINC00556-201ENST00000569603 412 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AC126365.2-201ENST00000580630 379 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC073333.2-201ENST00000603589 769 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 BNIP3P19-201ENST00000605397 577 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC073111.2-201ENST00000605657 1075 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC084824.5-201ENST00000612009 413 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 AL356752.1-201ENST00000615844 593 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC245014.3-201ENST00000618589 347 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
SMARCA1P28370 AC009120.7-201ENST00000623452 780 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC7.03□□□□□ -1.28
SMARCA1P28370 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
SMARCA1P28370 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC7.03□□□□□ -1.28
SMARCA1P28370 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 CASC19-238ENST00000641523 1558 ntBASIC7.03□□□□□ -1.28
SMARCA1P28370 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMARCA1P28370 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC7.03□□□□□ -1.28
SMARCA1P28370 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC7.02□□□□□ -1.28
SMARCA1P28370 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms