Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 LINC02019-201ENST00000608605 2060 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 BCORP1-203ENST00000513194 5093 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 RNA5SP433-201ENST00000364491 114 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 CRP-204ENST00000368112 787 ntTSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 NPM1P38-201ENST00000403835 865 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 SNORA11.3-201ENST00000408471 128 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 NMD3P2-201ENST00000421815 761 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC069154.1-201ENST00000432914 542 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC073410.1-201ENST00000435125 589 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 RPL5P7-201ENST00000444235 813 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AL590004.3-202ENST00000445883 451 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC016027.4-201ENST00000450866 277 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AP002884.1-201ENST00000479691 655 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 ST13P12-201ENST00000508958 1094 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC119403.2-201ENST00000590960 598 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC092681.3-201ENST00000609463 678 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 SNORA11.6-201ENST00000619030 128 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC000095.2-202ENST00000637415 154 ntBASIC4.52□□□□□ -1.69
HLA-DMBP28068 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HLA-DMBP28068 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC4.52□□□□□ -1.69
HLA-DMBP28068 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 CASC19-260ENST00000641828 2001 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 TPT1-204ENST00000379060 764 ntTSL 5 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 SNRPEP6-201ENST00000407465 277 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 MIR1282-201ENST00000408865 101 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 RN7SKP108-201ENST00000411367 328 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 AC245096.1-201ENST00000413104 546 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 AL035422.1-201ENST00000414193 397 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 RPL35AP31-201ENST00000418340 337 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 KCTD9P1-201ENST00000430462 1167 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 AC007679.3-201ENST00000434035 414 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 AMYP1-201ENST00000440059 1023 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 OR52I1-201ENST00000450052 1050 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 Z83838.1-202ENST00000456225 839 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 AC009963.3-201ENST00000458090 486 ntBASIC4.51□□□□□ -1.69
HLA-DMBP28068 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC4.51□□□□□ -1.69
HLA-DMBP28068 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HLA-DMBP28068 OR56A7P-201ENST00000524865 941 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 143.1 ms