Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MTND4P8-201ENST00000514997 1362 ntBASIC6.71□□□□□ -1.33
TRIM39Q9HCM9 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
TRIM39Q9HCM9 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.71□□□□□ -1.33
TRIM39Q9HCM9 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.33
TRIM39Q9HCM9 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ANKRD36P1-201ENST00000344424 659 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 UBE2Q2P1-202ENST00000354771 883 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC092634.1-201ENST00000366505 199 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 RNU6-636P-201ENST00000384598 107 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 RNU6-932P-201ENST00000391108 106 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC026310.1-201ENST00000396004 378 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ATP5HP3-201ENST00000396994 486 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ATP5F1P2-201ENST00000398143 760 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 DNAJC19P6-201ENST00000401853 280 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 PTPN2P1-201ENST00000423212 1072 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 TRBV29OR9-2-201ENST00000427589 333 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 HMGN1P32-201ENST00000441744 256 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 GAPDHP20-201ENST00000444107 1007 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 HSFY3P-201ENST00000444242 1191 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 SETD6P1-201ENST00000444575 317 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC022080.2-201ENST00000452932 533 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 RPSAP24-201ENST00000461543 873 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC115223.1-201ENST00000466377 870 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AP000563.1-201ENST00000490865 758 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 BTG4P1-201ENST00000510421 183 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 RNA5SP303-201ENST00000516192 130 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC140063.1-201ENST00000541343 259 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 CHEK2P2-201ENST00000554701 672 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC007346.2-201ENST00000564816 892 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC007346.1-201ENST00000569208 867 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 CTSLP2-201ENST00000580501 394 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 FAM106CP-201ENST00000582212 507 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 MIR6849-201ENST00000618543 69 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AP003399.1-201ENST00000637534 361 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AL596275.2-207ENST00000641188 675 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AP000641.1-201ENST00000531988 1639 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC010329.1-201ENST00000593903 8328 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 AC245100.2-201ENST00000454544 1679 ntBASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
TRIM39Q9HCM9 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms