Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC7.99□□□□□ -1.13
CHMP4AQ9BY43 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
CHMP4AQ9BY43 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CHMP4AQ9BY43 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC005034.3-201ENST00000604845 1747 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 PABPC1P8-201ENST00000452851 2086 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AL121950.1-201ENST00000624993 2077 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC010132.2-201ENST00000295493 1043 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AL445238.1-204ENST00000400311 463 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 SNORA11.5-201ENST00000408163 128 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AL355355.1-201ENST00000442900 793 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC002553.3-201ENST00000453002 341 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC104339.1-201ENST00000465478 348 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC092865.4-201ENST00000477936 615 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 RNA5SP434-201ENST00000516647 121 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC020915.5-201ENST00000596836 964 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC092692.1-201ENST00000623625 2595 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC006484.1-201ENST00000435086 1884 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 AC110373.1-201ENST00000505994 3505 ntBASIC7.98□□□□□ -1.13
CHMP4AQ9BY43 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC132825.1-201ENST00000463573 2247 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 OR11H13P-201ENST00000359695 979 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 RNA5SP431-201ENST00000410312 120 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AKR1B10P1-201ENST00000425765 942 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 PSMD10P2-201ENST00000432890 672 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 SEPT14P12-201ENST00000442280 560 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AL022237.1-201ENST00000446663 358 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC092967.1-201ENST00000449016 481 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC011411.1-201ENST00000509592 876 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 SNORA81.2-201ENST00000516868 170 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC027667.1-201ENST00000545814 304 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 MED21-206ENST00000546323 575 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 EIF1AXP2-201ENST00000555940 413 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AL513218.1-201ENST00000606527 391 ntBASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
CHMP4AQ9BY43 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.13
CHMP4AQ9BY43 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
CHMP4AQ9BY43 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.96□□□□□ -1.13
CHMP4AQ9BY43 AC087565.3-202ENST00000642085 1603 ntBASIC7.96□□□□□ -1.13
CHMP4AQ9BY43 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC7.96□□□□□ -1.13
CHMP4AQ9BY43 AC112243.1-201ENST00000623949 3851 ntBASIC7.96□□□□□ -1.13
CHMP4AQ9BY43 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
CHMP4AQ9BY43 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 RNA5SP433-201ENST00000364491 114 ntBASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 RNU4-7P-201ENST00000364758 141 ntBASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 CRP-204ENST00000368112 787 ntTSL 2 BASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 PNKDP1-201ENST00000435914 430 ntBASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 Z84478.1-201ENST00000438230 1219 ntBASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 PPIAP7-201ENST00000454070 489 ntBASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 RPL37P23-201ENST00000492641 294 ntBASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 OR7E99P-201ENST00000505750 922 ntBASIC7.96□□□□□ -1.14
CHMP4AQ9BY43 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms