Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 snoU109.5-201ENST00000516231 132 ntBASIC5.99□□□□□ -1.45
VPS39Q96JC1 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 NDUFB9P1-201ENST00000604683 510 ntBASIC5.99□□□□□ -1.45
VPS39Q96JC1 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 HTR1DP1-201ENST00000616500 888 ntBASIC5.99□□□□□ -1.45
VPS39Q96JC1 AC096861.1-201ENST00000616652 240 ntBASIC5.99□□□□□ -1.45
VPS39Q96JC1 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
VPS39Q96JC1 AP001153.1-201ENST00000641024 338 ntBASIC5.99□□□□□ -1.45
VPS39Q96JC1 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
VPS39Q96JC1 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
VPS39Q96JC1 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
VPS39Q96JC1 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 AL161912.4-201ENST00000623889 2468 ntBASIC5.99□□□□□ -1.45
VPS39Q96JC1 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.99□□□□□ -1.45
VPS39Q96JC1 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 AC130304.1-201ENST00000622942 2385 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 MIPEPP2-201ENST00000422560 1819 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 RN7SKP128-201ENST00000364270 303 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 RNU6-167P-201ENST00000384292 106 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 MIR191-201ENST00000384873 92 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 NMD3P2-201ENST00000421815 761 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 VN1R20P-201ENST00000425215 966 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 SEPT14P12-201ENST00000442280 560 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 KF459542.1-201ENST00000450908 553 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 AC079080.1-201ENST00000479841 822 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 ZNF519P4-201ENST00000514008 125 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 AC007346.2-201ENST00000564816 892 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 ARGFXP2-201ENST00000579304 949 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 SNX18P12-201ENST00000624821 759 ntBASIC5.98□□□□□ -1.45
VPS39Q96JC1 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
VPS39Q96JC1 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
VPS39Q96JC1 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 RNA5SP198-201ENST00000410376 127 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 RN7SKP108-201ENST00000411367 328 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC130360.1-201ENST00000425489 1117 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 MGAT2P2-201ENST00000427194 797 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 ARAFP2-201ENST00000440565 559 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 TRIM60P16-201ENST00000444048 694 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms