Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC024587.1-201ENST00000505925 2157 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC140479.2-201ENST00000421567 3130 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL359091.1-201ENST00000449048 1734 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RPL11P4-201ENST00000332269 436 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 YWHAZP4-201ENST00000392459 708 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RN7SKP17-201ENST00000411242 351 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 CR848007.2-201ENST00000424918 787 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 MAPRE1P3-201ENST00000435438 796 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC013410.1-201ENST00000436223 1232 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RPEP4-201ENST00000437636 602 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 SEPT14P12-201ENST00000442280 560 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 CXCR2P1-202ENST00000443392 1074 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 POU5F1P5-201ENST00000445059 658 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RBMY2HP-201ENST00000457961 720 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC114728.1-201ENST00000488289 483 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL035690.1-201ENST00000490892 383 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC008628.1-201ENST00000508663 265 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 KHDC1P1-201ENST00000511053 508 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 Y_RNA.710-201ENST00000516975 110 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 CYCSP25-201ENST00000525280 316 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC135626.1-201ENST00000556983 435 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 CCDC58P1-201ENST00000578567 430 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL713998.2-201ENST00000604538 1198 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC022001.1-201ENST00000605193 268 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC008833.1-201ENST00000611633 691 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC069234.4-201ENST00000621276 412 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC089999.3-201ENST00000622440 577 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL356490.1-201ENST00000623079 479 ntBASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 LINC02019-201ENST00000608605 2060 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 OR4G1P-202ENST00000641173 1788 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 RNA5SP346-201ENST00000363541 121 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 SNORA64.3-201ENST00000365647 134 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 FAR1P1-201ENST00000427163 934 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AL590623.1-201ENST00000427864 105 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 NPM1P25-201ENST00000429734 854 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 GAPDHP19-201ENST00000431768 1005 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC094019.1-201ENST00000434678 472 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms