Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC145423.1-201ENST00000605712 336 ntBASIC8.17□□□□□ -1.1
MSH6P52701 OR52B5P-202ENST00000641118 1110 ntBASIC8.17□□□□□ -1.1
MSH6P52701 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC8.17□□□□□ -1.1
MSH6P52701 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
MSH6P52701 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC8.17□□□□□ -1.1
MSH6P52701 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC8.16□□□□□ -1.1
MSH6P52701 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
MSH6P52701 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
MSH6P52701 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
MSH6P52701 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
MSH6P52701 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
MSH6P52701 AL109941.1-201ENST00000401925 229 ntBASIC8.16□□□□□ -1.1
MSH6P52701 RNU6ATAC18P-201ENST00000408413 101 ntBASIC8.16□□□□□ -1.1
MSH6P52701 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC8.16□□□□□ -1.1
MSH6P52701 CYP4F30P-202ENST00000420048 405 ntBASIC8.16□□□□□ -1.1
MSH6P52701 EIF2S2P3-201ENST00000428356 999 ntBASIC8.16□□□□□ -1.1
MSH6P52701 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC8.16□□□□□ -1.1
MSH6P52701 AC009120.1-201ENST00000493458 473 ntBASIC8.16□□□□□ -1.1
MSH6P52701 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC8.16□□□□□ -1.1
MSH6P52701 AC073916.1-201ENST00000545095 130 ntBASIC8.16□□□□□ -1.1
MSH6P52701 TXNP4-201ENST00000575018 310 ntBASIC8.16□□□□□ -1.1
MSH6P52701 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC8.16□□□□□ -1.1
MSH6P52701 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC8.16□□□□□ -1.1
MSH6P52701 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC8.16□□□□□ -1.1
MSH6P52701 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
MSH6P52701 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
MSH6P52701 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC8.16□□□□□ -1.1
MSH6P52701 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 AC005618.1-201ENST00000606901 3148 ntBASIC8.16□□□□□ -1.1
MSH6P52701 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 AP002370.1-201ENST00000528055 1602 ntBASIC8.16□□□□□ -1.1
MSH6P52701 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
MSH6P52701 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSH6P52701 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
MSH6P52701 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC8.15□□□□□ -1.1
MSH6P52701 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC8.15□□□□□ -1.1
MSH6P52701 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 HDAC1P2-201ENST00000453661 1398 ntBASIC8.15□□□□□ -1.1
MSH6P52701 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 RPL23P2-201ENST00000320371 421 ntBASIC8.15□□□□□ -1.1
MSH6P52701 RNA5SP131-201ENST00000365452 119 ntBASIC8.15□□□□□ -1.1
MSH6P52701 MIR141-201ENST00000384975 95 ntBASIC8.15□□□□□ -1.1
MSH6P52701 AC097721.1-201ENST00000427150 1253 ntBASIC8.15□□□□□ -1.1
MSH6P52701 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC8.15□□□□□ -1.1
MSH6P52701 RPL23AP60-201ENST00000450011 454 ntBASIC8.15□□□□□ -1.1
MSH6P52701 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC8.15□□□□□ -1.1
MSH6P52701 GYG1P1-201ENST00000460864 698 ntBASIC8.15□□□□□ -1.1
MSH6P52701 AC073594.1-201ENST00000462065 364 ntBASIC8.15□□□□□ -1.1
MSH6P52701 AC068522.1-201ENST00000482895 345 ntBASIC8.15□□□□□ -1.1
MSH6P52701 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC8.15□□□□□ -1.1
MSH6P52701 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC8.15□□□□□ -1.1
MSH6P52701 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC8.15□□□□□ -1.1
MSH6P52701 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC8.15□□□□□ -1.1
MSH6P52701 SAMMSON-209ENST00000641222 1100 ntBASIC8.15□□□□□ -1.1
MSH6P52701 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC8.15□□□□□ -1.1
MSH6P52701 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSH6P52701 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC8.15□□□□□ -1.11
MSH6P52701 TMEM75-201ENST00000624314 2165 ntBASIC8.15□□□□□ -1.11
MSH6P52701 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.11
MSH6P52701 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC8.15□□□□□ -1.11
MSH6P52701 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
MSH6P52701 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC8.15□□□□□ -1.11
MSH6P52701 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC8.15□□□□□ -1.11
MSH6P52701 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC8.15□□□□□ -1.11
MSH6P52701 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC8.14□□□□□ -1.11
MSH6P52701 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSH6P52701 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSH6P52701 AC026951.1-201ENST00000559530 2459 ntBASIC8.14□□□□□ -1.11
MSH6P52701 AL731556.1-201ENST00000394628 3711 ntBASIC8.14□□□□□ -1.11
MSH6P52701 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC8.14□□□□□ -1.11
MSH6P52701 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC8.14□□□□□ -1.11
MSH6P52701 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms