Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC7.33□□□□□ -1.24
LIG3P49916 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC7.33□□□□□ -1.24
LIG3P49916 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 OR4C1P-201ENST00000530880 937 ntBASIC7.33□□□□□ -1.24
LIG3P49916 NF1P12-201ENST00000549593 583 ntBASIC7.33□□□□□ -1.24
LIG3P49916 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC7.33□□□□□ -1.24
LIG3P49916 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC7.33□□□□□ -1.24
LIG3P49916 MIR5095-201ENST00000578844 88 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 VN1R83P-201ENST00000595685 445 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 AC113361.1-201ENST00000606683 543 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC012510.1-201ENST00000607946 759 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC097381.3-201ENST00000608962 462 ntBASIC7.33□□□□□ -1.24
LIG3P49916 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 AL133243.1-201ENST00000614487 366 ntBASIC7.33□□□□□ -1.24
LIG3P49916 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC7.33□□□□□ -1.24
LIG3P49916 Z69908.1-201ENST00000622603 247 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AC084035.1-201ENST00000634543 607 ntBASIC7.33□□□□□ -1.24
LIG3P49916 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC7.33□□□□□ -1.24
LIG3P49916 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 AC125232.1-201ENST00000452554 1408 ntBASIC7.33□□□□□ -1.24
LIG3P49916 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
LIG3P49916 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIG3P49916 AC017007.4-201ENST00000503353 1352 ntBASIC7.33□□□□□ -1.24
LIG3P49916 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 AC003985.2-201ENST00000562268 1669 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC7.32□□□□□ -1.24
LIG3P49916 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 NCOA4P2-201ENST00000340589 1813 ntBASIC7.32□□□□□ -1.24
LIG3P49916 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 CDY7P-201ENST00000429883 1604 ntBASIC7.32□□□□□ -1.24
LIG3P49916 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
LIG3P49916 PPIAP22-201ENST00000358455 498 ntBASIC7.32□□□□□ -1.24
LIG3P49916 RNU1-87P-201ENST00000363727 170 ntBASIC7.32□□□□□ -1.24
LIG3P49916 Y_RNA.194-201ENST00000363985 102 ntBASIC7.32□□□□□ -1.24
LIG3P49916 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 RNA5SP177-201ENST00000410122 107 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 AL360013.1-201ENST00000419031 858 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AL645936.2-201ENST00000430565 928 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC239800.1-201ENST00000442049 719 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC7.32□□□□□ -1.24
LIG3P49916 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 AL050341.1-201ENST00000447743 313 ntBASIC7.32□□□□□ -1.24
LIG3P49916 PMS2P11-201ENST00000451831 574 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC093799.1-201ENST00000452411 499 ntBASIC7.32□□□□□ -1.24
LIG3P49916 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC7.32□□□□□ -1.24
LIG3P49916 AC107398.1-201ENST00000486904 505 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC7.32□□□□□ -1.24
LIG3P49916 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC7.32□□□□□ -1.24
LIG3P49916 AF213884.2-201ENST00000510417 903 ntBASIC7.32□□□□□ -1.24
LIG3P49916 OR5H4P-201ENST00000510851 923 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC010625.1-201ENST00000511296 403 ntBASIC7.32□□□□□ -1.24
LIG3P49916 RNA5SP75-201ENST00000516841 111 ntBASIC7.32□□□□□ -1.24
LIG3P49916 RNU6-232P-201ENST00000517144 64 ntBASIC7.32□□□□□ -1.24
LIG3P49916 IGKV1D-32-201ENST00000517449 318 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC7.32□□□□□ -1.24
LIG3P49916 HNRNPA1P71-201ENST00000559135 950 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 RPS7P1-201ENST00000571702 585 ntBASIC7.32□□□□□ -1.24
LIG3P49916 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 AC012213.3-201ENST00000577199 777 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC090241.1-201ENST00000587732 621 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 AL023806.2-201ENST00000603042 263 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AL512430.4-201ENST00000603085 613 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC005070.2-201ENST00000604391 260 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AL163642.2-201ENST00000604722 1019 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC023206.1-201ENST00000605824 298 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AL645933.2-201ENST00000606743 1207 ntBASIC7.32□□□□□ -1.24
LIG3P49916 HOTTIP_2.1-201ENST00000616633 376 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC109454.4-201ENST00000623411 649 ntBASIC7.32□□□□□ -1.24
LIG3P49916 AC091931.1-201ENST00000623488 728 ntBASIC7.32□□□□□ -1.24
LIG3P49916 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
LIG3P49916 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms