Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.42□□□□□ -1.22
COL18A1P39060 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL18A1P39060 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.42□□□□□ -1.22
COL18A1P39060 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 RNVU1-6-201ENST00000364688 164 ntBASIC7.41□□□□□ -1.22
COL18A1P39060 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.41□□□□□ -1.22
COL18A1P39060 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 AC006206.1-201ENST00000544842 3387 ntBASIC7.41□□□□□ -1.22
COL18A1P39060 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 PABPC1P8-201ENST00000452851 2086 ntBASIC7.41□□□□□ -1.22
COL18A1P39060 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC7.41□□□□□ -1.22
COL18A1P39060 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 ERG-205ENST00000398910 4954 ntTSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 AP003170.5-201ENST00000397185 335 ntBASIC7.41□□□□□ -1.22
COL18A1P39060 AL645733.1-201ENST00000402250 217 ntBASIC7.41□□□□□ -1.22
COL18A1P39060 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 AL445687.2-201ENST00000458156 728 ntBASIC7.41□□□□□ -1.22
COL18A1P39060 RN7SL447P-201ENST00000494711 245 ntBASIC7.41□□□□□ -1.22
COL18A1P39060 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL18A1P39060 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC7.41□□□□□ -1.22
COL18A1P39060 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC7.41□□□□□ -1.22
COL18A1P39060 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.41□□□□□ -1.22
COL18A1P39060 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
COL18A1P39060 AC006511.3-201ENST00000624929 1783 ntBASIC7.4□□□□□ -1.22
COL18A1P39060 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC7.4□□□□□ -1.22
COL18A1P39060 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.4□□□□□ -1.22
COL18A1P39060 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC7.4□□□□□ -1.22
COL18A1P39060 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC7.4□□□□□ -1.22
COL18A1P39060 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL18A1P39060 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.4□□□□□ -1.23
COL18A1P39060 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.4□□□□□ -1.23
COL18A1P39060 SRSF1P1-201ENST00000424058 520 ntBASIC7.4□□□□□ -1.23
COL18A1P39060 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.4□□□□□ -1.23
COL18A1P39060 TRBV5-2-201ENST00000489095 273 ntBASIC7.4□□□□□ -1.23
COL18A1P39060 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC7.4□□□□□ -1.23
COL18A1P39060 AL121594.2-201ENST00000541658 472 ntBASIC7.4□□□□□ -1.23
COL18A1P39060 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC7.4□□□□□ -1.23
COL18A1P39060 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.4□□□□□ -1.23
COL18A1P39060 AC137695.1-201ENST00000604126 489 ntBASIC7.4□□□□□ -1.23
COL18A1P39060 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7.4□□□□□ -1.23
COL18A1P39060 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC7.4□□□□□ -1.23
COL18A1P39060 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.4□□□□□ -1.23
COL18A1P39060 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.23
COL18A1P39060 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.4□□□□□ -1.23
COL18A1P39060 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.23
COL18A1P39060 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL18A1P39060 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 AC022034.1-201ENST00000512867 2156 ntBASIC7.39□□□□□ -1.23
COL18A1P39060 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.39□□□□□ -1.23
COL18A1P39060 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
COL18A1P39060 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL18A1P39060 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms