Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
SCN4AP35499 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC6.91□□□□□ -1.3
SCN4AP35499 RNA5SP319-201ENST00000362768 119 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 RNA5SP30-201ENST00000365552 115 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 AC013442.1-201ENST00000397347 228 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 PTCD2P2-201ENST00000415579 1095 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 AC015983.1-201ENST00000441577 373 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 AP000547.1-201ENST00000454360 617 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.91□□□□□ -1.3
SCN4AP35499 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 BMPR1APS2-201ENST00000527904 1012 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 AC012616.1-201ENST00000600294 197 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 uc_338.18-201ENST00000615451 175 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
SCN4AP35499 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 AC022905.1-201ENST00000503430 3048 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
SCN4AP35499 ZNF658B-201ENST00000602828 3408 ntBASIC6.91□□□□□ -1.3
SCN4AP35499 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.91□□□□□ -1.3
SCN4AP35499 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SCN4AP35499 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.91□□□□□ -1.3
SCN4AP35499 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.9□□□□□ -1.3
SCN4AP35499 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.9□□□□□ -1.3
SCN4AP35499 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
SCN4AP35499 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.9□□□□□ -1.3
SCN4AP35499 AL391261.1-201ENST00000555712 1479 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 RNA5SP305-201ENST00000362665 119 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 RNA5SP87-201ENST00000384155 118 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 AL390774.1-201ENST00000411924 246 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 MYL6P5-201ENST00000412707 459 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 RN7SL346P-201ENST00000491561 294 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 AC090638.1-201ENST00000498296 909 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
SCN4AP35499 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.9□□□□□ -1.3
SCN4AP35499 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.9□□□□□ -1.3
SCN4AP35499 AC106730.2-201ENST00000566641 540 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 RNU4ATAC-201ENST00000580972 127 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 AC063977.5-201ENST00000601044 974 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 AC000068.2-201ENST00000608816 460 ntBASIC6.9□□□□□ -1.3
SCN4AP35499 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.3
SCN4AP35499 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.9□□□□□ -1.3
SCN4AP35499 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC6.9□□□□□ -1.31
SCN4AP35499 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.9□□□□□ -1.31
SCN4AP35499 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SCN4AP35499 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SCN4AP35499 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.9□□□□□ -1.31
SCN4AP35499 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SCN4AP35499 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.9□□□□□ -1.31
SCN4AP35499 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SCN4AP35499 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.31
SCN4AP35499 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.9□□□□□ -1.31
SCN4AP35499 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC6.9□□□□□ -1.31
SCN4AP35499 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC6.9□□□□□ -1.31
SCN4AP35499 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
SCN4AP35499 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
SCN4AP35499 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 AP002370.1-201ENST00000528055 1602 ntBASIC6.89□□□□□ -1.31
SCN4AP35499 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
SCN4AP35499 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
SCN4AP35499 RN7SL591P-201ENST00000496150 292 ntBASIC6.89□□□□□ -1.31
SCN4AP35499 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.89□□□□□ -1.31
SCN4AP35499 AC139365.2-201ENST00000517972 253 ntBASIC6.89□□□□□ -1.31
SCN4AP35499 OR11J2P-201ENST00000555298 907 ntBASIC6.89□□□□□ -1.31
SCN4AP35499 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.89□□□□□ -1.31
SCN4AP35499 AC010245.2-201ENST00000606908 1167 ntBASIC6.89□□□□□ -1.31
SCN4AP35499 AL022394.1-201ENST00000606979 292 ntBASIC6.89□□□□□ -1.31
SCN4AP35499 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.89□□□□□ -1.31
SCN4AP35499 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC6.89□□□□□ -1.31
SCN4AP35499 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SCN4AP35499 ATM-215ENST00000530958 5718 ntTSL 2 BASIC6.88□□□□□ -1.31
SCN4AP35499 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.88□□□□□ -1.31
SCN4AP35499 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms