Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MEMO1P4-201ENST00000453590 386 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 BTF3P15-201ENST00000455606 336 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC8.48□□□□□ -1.05
COL9A1P20849 RPL34P22-201ENST00000468193 318 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC090589.1-201ENST00000473109 362 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC112204.1-201ENST00000502591 103 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC8.48□□□□□ -1.05
COL9A1P20849 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC105417.1-201ENST00000514691 285 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 Y_RNA.672-201ENST00000516289 104 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 RNU6-445P-201ENST00000516949 107 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC8.48□□□□□ -1.05
COL9A1P20849 AL132855.1-201ENST00000557368 207 ntTSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC068714.1-201ENST00000559623 800 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 RN7SL619P-201ENST00000581753 258 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC004257.1-201ENST00000593588 277 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC113143.2-201ENST00000603849 394 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 RPL23AP61-201ENST00000623642 466 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC005618.4-201ENST00000625053 554 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC026950.2-201ENST00000633456 470 ntTSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC006453.3-201ENST00000635891 377 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 MTND4LP32-201ENST00000636111 270 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC8.48□□□□□ -1.05
COL9A1P20849 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 FAM74A4-203ENST00000621724 1862 ntTSL 2 BASIC8.48□□□□□ -1.05
COL9A1P20849 NSD1-216ENST00000638627 1866 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 EXOC7P1-201ENST00000509881 2059 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 APOL2-201ENST00000249066 2685 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 LRRC40-201ENST00000370952 2884 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 ACVR1-202ENST00000409283 2879 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 ETV3-202ENST00000368192 5254 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 KIF13A-213ENST00000636847 5538 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 IMPG1-204ENST00000611179 3324 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 DPH3-204ENST00000488423 3131 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 SLC30A8-202ENST00000456015 2520 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 AP001157.1-201ENST00000550837 2339 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 ZNF385B-203ENST00000409692 2109 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 AMOTL1-202ENST00000317829 8844 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 TRIM23-201ENST00000231524 4186 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 PIEZO2-202ENST00000383408 9718 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 AC020658.3-201ENST00000568093 4028 ntBASIC8.48□□□□□ -1.05
COL9A1P20849 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 EPB41L5-202ENST00000331393 1777 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
COL9A1P20849 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 LINC01291-201ENST00000377469 3662 ntTSL 2 BASIC8.48□□□□□ -1.05
COL9A1P20849 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC8.48□□□□□ -1.05
COL9A1P20849 PLEC-207ENST00000398774 14646 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 MRNIP-204ENST00000518219 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
COL9A1P20849 AL137782.1-201ENST00000563635 4128 ntTSL 5 BASIC8.48□□□□□ -1.05
COL9A1P20849 PDE1A-203ENST00000409365 2034 ntTSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 IFT46-201ENST00000264020 1819 ntTSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 ASNSD1-201ENST00000260952 2450 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 OXNAD1-207ENST00000606098 2288 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 ASB15-201ENST00000275699 2706 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 HEPACAM2-203ENST00000440868 2060 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 ELF5-205ENST00000532417 2330 ntTSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 HIPK1-208ENST00000426820 4112 ntAPPRIS P1 TSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 UHRF2P1-201ENST00000431339 2387 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 FBXO38-202ENST00000340253 4424 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 ANK3-205ENST00000373827 7202 ntAPPRIS ALT2 TSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 HENMT1-201ENST00000370031 1717 ntTSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 Y_RNA.149-201ENST00000363558 117 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
COL9A1P20849 RNU6-1297P-201ENST00000384415 104 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AC096664.1-201ENST00000393996 778 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 AC092745.2-202ENST00000411880 369 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 RPL7P57-201ENST00000423238 740 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC8.47□□□□□ -1.05
COL9A1P20849 AP001324.1-201ENST00000428553 399 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AL513175.1-201ENST00000431492 780 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 ASS1P5-201ENST00000435496 1239 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
COL9A1P20849 CBX1P1-201ENST00000440184 427 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AP002856.4-201ENST00000441638 569 ntTSL 4 BASIC8.47□□□□□ -1.05
COL9A1P20849 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC8.47□□□□□ -1.05
COL9A1P20849 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC8.47□□□□□ -1.05
COL9A1P20849 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC8.47□□□□□ -1.05
COL9A1P20849 RPS29P5-201ENST00000452777 171 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 PA2G4P4-201ENST00000473864 1182 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 RN7SL214P-201ENST00000487317 265 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 OR7E99P-201ENST00000505750 922 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC8.47□□□□□ -1.05
COL9A1P20849 RNU6-988P-201ENST00000519081 107 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AC130366.1-201ENST00000526505 1192 ntBASIC8.47□□□□□ -1.05
COL9A1P20849 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
COL9A1P20849 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC8.47□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms