Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AP005119.1-201ENST00000580956 292 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC027229.1-201ENST00000583887 253 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC009237.12-201ENST00000604755 742 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 FAM72A-208ENST00000607379 1139 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RNU6-84P-201ENST00000607737 102 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 SDR42E1P1-201ENST00000611327 477 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 OR7A1P-202ENST00000641542 1158 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AL929601.4-201ENST00000613011 1341 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC105749.1-201ENST00000631338 2008 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AL731556.1-201ENST00000394628 3711 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC024587.1-201ENST00000505925 2157 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 RN7SKP278-201ENST00000410504 342 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 RN7SKP161-201ENST00000411110 305 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 TRIM60P16-201ENST00000444048 694 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AP006222.1-205ENST00000450734 457 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AL445665.1-202ENST00000452436 324 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 SCARNA18.1-201ENST00000516330 83 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC091078.2-201ENST00000557145 559 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 SNORD95-201ENST00000579879 68 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AL645933.2-201ENST00000606743 1207 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC108673.3-201ENST00000609183 335 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 RN7SL787P-201ENST00000613000 284 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AL445649.1-201ENST00000615941 691 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC022960.2-201ENST00000616300 666 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 AC123912.3-201ENST00000600907 1367 ntBASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HDDC3Q8N4P3 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AP001541.1-201ENST00000623322 1904 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 DOCK11P1-201ENST00000553480 5932 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 TMSB4XP2-201ENST00000335179 210 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 RNA5SP375-201ENST00000362975 119 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 RN7SKP292-201ENST00000365522 317 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 RNU11-6P-201ENST00000391127 133 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 RN7SKP293-201ENST00000411389 296 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AL096829.1-201ENST00000413677 457 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AL035660.1-201ENST00000422041 222 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 AL451063.1-201ENST00000450164 1133 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 USP9YP2-201ENST00000504503 1000 ntBASIC6.15□□□□□ -1.42
HDDC3Q8N4P3 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms