Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC9.56□□□□□ -0.88
CUX1P39880 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC9.56□□□□□ -0.88
CUX1P39880 LDHAP2-201ENST00000437325 985 ntBASIC9.56□□□□□ -0.88
CUX1P39880 AC096775.1-201ENST00000437724 448 ntBASIC9.56□□□□□ -0.88
CUX1P39880 MIR2117-201ENST00000516780 80 ntBASIC9.56□□□□□ -0.88
CUX1P39880 RNU6ATAC24P-201ENST00000516811 135 ntBASIC9.56□□□□□ -0.88
CUX1P39880 AC106730.2-201ENST00000566641 540 ntBASIC9.56□□□□□ -0.88
CUX1P39880 MIR4311-201ENST00000580794 100 ntBASIC9.56□□□□□ -0.88
CUX1P39880 MIR6810-201ENST00000622701 70 ntBASIC9.56□□□□□ -0.88
CUX1P39880 AC073342.3-201ENST00000624211 193 ntBASIC9.56□□□□□ -0.88
CUX1P39880 CASC22-202ENST00000628396 802 ntTSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC9.56□□□□□ -0.88
CUX1P39880 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC9.55□□□□□ -0.88
CUX1P39880 RN7SKP151-201ENST00000410230 316 ntBASIC9.55□□□□□ -0.88
CUX1P39880 TMA16P2-201ENST00000413187 601 ntBASIC9.55□□□□□ -0.88
CUX1P39880 AC009784.1-201ENST00000426484 460 ntBASIC9.55□□□□□ -0.88
CUX1P39880 HIGD1AP8-201ENST00000453927 274 ntBASIC9.55□□□□□ -0.88
CUX1P39880 RPL7P6-201ENST00000480903 738 ntBASIC9.55□□□□□ -0.88
CUX1P39880 RPL7P39-201ENST00000481157 744 ntBASIC9.55□□□□□ -0.88
CUX1P39880 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC9.55□□□□□ -0.88
CUX1P39880 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC9.55□□□□□ -0.88
CUX1P39880 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC9.55□□□□□ -0.88
CUX1P39880 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
CUX1P39880 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC9.55□□□□□ -0.88
CUX1P39880 CPS1-IT1-201ENST00000628368 2306 ntBASIC9.55□□□□□ -0.88
CUX1P39880 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC9.55□□□□□ -0.88
CUX1P39880 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 MFSD8-239ENST00000641590 2479 ntBASIC9.54□□□□□ -0.88
CUX1P39880 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC9.54□□□□□ -0.88
CUX1P39880 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 AL121835.1-201ENST00000404250 354 ntBASIC9.54□□□□□ -0.88
CUX1P39880 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC9.54□□□□□ -0.88
CUX1P39880 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC9.54□□□□□ -0.88
CUX1P39880 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC9.54□□□□□ -0.88
CUX1P39880 RN7SL51P-201ENST00000468230 285 ntBASIC9.54□□□□□ -0.88
CUX1P39880 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC9.54□□□□□ -0.88
CUX1P39880 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC9.54□□□□□ -0.88
CUX1P39880 MIR6820-201ENST00000611508 62 ntBASIC9.54□□□□□ -0.88
CUX1P39880 AC090527.3-201ENST00000619041 548 ntBASIC9.54□□□□□ -0.88
CUX1P39880 AL445528.2-201ENST00000620582 470 ntBASIC9.54□□□□□ -0.88
CUX1P39880 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
CUX1P39880 AL391262.1-201ENST00000556558 1992 ntBASIC9.54□□□□□ -0.88
CUX1P39880 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC9.54□□□□□ -0.88
CUX1P39880 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC9.53□□□□□ -0.88
CUX1P39880 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 SNORA16A-201ENST00000384342 137 ntBASIC9.53□□□□□ -0.88
CUX1P39880 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC9.53□□□□□ -0.88
CUX1P39880 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC9.53□□□□□ -0.88
CUX1P39880 RN7SL591P-201ENST00000496150 292 ntBASIC9.53□□□□□ -0.88
CUX1P39880 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC9.53□□□□□ -0.88
CUX1P39880 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC9.53□□□□□ -0.88
CUX1P39880 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC9.53□□□□□ -0.88
CUX1P39880 AC091193.1-201ENST00000604640 448 ntBASIC9.53□□□□□ -0.88
CUX1P39880 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC9.53□□□□□ -0.88
CUX1P39880 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC9.53□□□□□ -0.88
CUX1P39880 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
CUX1P39880 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 GLRA2-201ENST00000218075 3216 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
CUX1P39880 AL034549.2-201ENST00000618285 3373 ntBASIC9.53□□□□□ -0.88
CUX1P39880 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC9.53□□□□□ -0.88
CUX1P39880 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC9.52□□□□□ -0.88
CUX1P39880 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
CUX1P39880 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
CUX1P39880 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC9.52□□□□□ -0.88
CUX1P39880 AC016027.5-201ENST00000427227 210 ntBASIC9.52□□□□□ -0.88
CUX1P39880 AL645937.3-201ENST00000453647 936 ntBASIC9.52□□□□□ -0.88
CUX1P39880 AL389915.2-201ENST00000454576 441 ntBASIC9.52□□□□□ -0.88
CUX1P39880 RPL7L1P3-201ENST00000455249 689 ntBASIC9.52□□□□□ -0.88
CUX1P39880 DUTP1-201ENST00000493631 470 ntBASIC9.52□□□□□ -0.88
CUX1P39880 AC147055.3-201ENST00000510547 851 ntBASIC9.52□□□□□ -0.88
CUX1P39880 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC9.52□□□□□ -0.88
CUX1P39880 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms