Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP001284.1-201ENST00000528393 2118 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC011933.2-201ENST00000578539 2790 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC138907.8-201ENST00000623981 2256 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 AL121977.1-201ENST00000401636 979 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 GCNT1P4-201ENST00000404096 329 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 RN7SKP17-201ENST00000411242 351 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 RPS15AP30-201ENST00000420976 390 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 RPL12P16-201ENST00000431098 498 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 HMGB1P7-201ENST00000450921 612 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC090602.1-201ENST00000469695 252 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 RPL23AP40-201ENST00000487630 390 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 TRBV5-2-201ENST00000489095 273 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC091874.2-201ENST00000505889 720 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 B4GALNT2P1-201ENST00000508857 307 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 ZNF519P4-201ENST00000514008 125 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 HSD3BP3-201ENST00000514706 994 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 IGHVII-60-1-201ENST00000519079 256 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 NATP-201ENST00000523491 878 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 TOMM20P1-201ENST00000534518 427 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 NPM1P42-201ENST00000560329 862 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC004232.2-201ENST00000574245 821 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 AL499605.1-201ENST00000604628 403 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC005224.3-201ENST00000584683 2140 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC087516.1-201ENST00000561236 2428 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 BRAFP1-201ENST00000445336 2703 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 AC015689.2-201ENST00000528172 1738 ntBASIC4.55□□□□□ -1.68
HLA-DMBP28068 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HLA-DMBP28068 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 SAMM50P1-201ENST00000455403 1399 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AC005261.6-201ENST00000623072 1387 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HLA-DMBP28068 MIR133A2-201ENST00000347538 102 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 RNA5SP110-201ENST00000362638 115 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AL132875.1-201ENST00000403623 949 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 AL139805.1-201ENST00000407837 289 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 RNA5SP156-201ENST00000410250 110 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 RNA5SP431-201ENST00000410312 120 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 RNA5SP198-201ENST00000410376 127 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AL354868.1-201ENST00000417077 482 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 SDC4P-201ENST00000453285 601 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 PFN1P8-201ENST00000497012 543 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 HMGN1P17-201ENST00000513734 295 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AC006512.2-201ENST00000543250 486 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 BICD1-206ENST00000551086 423 ntTSL 3 BASIC4.54□□□□□ -1.68
HLA-DMBP28068 AL049779.3-201ENST00000557141 606 ntBASIC4.54□□□□□ -1.68
HLA-DMBP28068 AC002519.2-203ENST00000567043 837 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms