Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 OR4A41P-201ENST00000533053 928 ntBASIC5.58□□□□□ -1.52
SDC1P18827 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.58□□□□□ -1.52
SDC1P18827 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.58□□□□□ -1.52
SDC1P18827 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.58□□□□□ -1.52
SDC1P18827 AC092332.1-201ENST00000563684 829 ntBASIC5.58□□□□□ -1.52
SDC1P18827 OR1E3-201ENST00000575608 948 ntBASIC5.58□□□□□ -1.52
SDC1P18827 ARGFXP2-201ENST00000579304 949 ntBASIC5.58□□□□□ -1.52
SDC1P18827 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.58□□□□□ -1.52
SDC1P18827 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 AC096708.4-201ENST00000620563 552 ntBASIC5.58□□□□□ -1.52
SDC1P18827 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.58□□□□□ -1.52
SDC1P18827 AC111152.1-202ENST00000635848 339 ntBASIC5.58□□□□□ -1.52
SDC1P18827 OR11H2-202ENST00000641517 1085 ntBASIC5.58□□□□□ -1.52
SDC1P18827 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 AP002512.4-202ENST00000641599 4530 ntBASIC5.58□□□□□ -1.52
SDC1P18827 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 AC087516.1-201ENST00000561236 2428 ntBASIC5.58□□□□□ -1.52
SDC1P18827 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.58□□□□□ -1.52
SDC1P18827 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 AC239868.2-201ENST00000564237 4527 ntBASIC5.58□□□□□ -1.52
SDC1P18827 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SDC1P18827 MFSD8-219ENST00000641228 2559 ntBASIC5.58□□□□□ -1.52
SDC1P18827 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SDC1P18827 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.57□□□□□ -1.52
SDC1P18827 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.57□□□□□ -1.52
SDC1P18827 SNORA51.9-201ENST00000384295 124 ntBASIC5.57□□□□□ -1.52
SDC1P18827 MIR130B-202ENST00000385018 82 ntBASIC5.57□□□□□ -1.52
SDC1P18827 RPL11P3-201ENST00000395256 523 ntBASIC5.57□□□□□ -1.52
SDC1P18827 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 RBBP4P5-201ENST00000398583 1266 ntBASIC5.57□□□□□ -1.52
SDC1P18827 GCNT1P4-201ENST00000404096 329 ntBASIC5.57□□□□□ -1.52
SDC1P18827 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 GAPDHP75-201ENST00000433910 943 ntBASIC5.57□□□□□ -1.52
SDC1P18827 RPL5P7-201ENST00000444235 813 ntBASIC5.57□□□□□ -1.52
SDC1P18827 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 RN7SKP35-201ENST00000517210 151 ntBASIC5.57□□□□□ -1.52
SDC1P18827 IGKV3D-25-201ENST00000519599 235 ntBASIC5.57□□□□□ -1.52
SDC1P18827 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 AC121758.1-202ENST00000556917 658 ntBASIC5.57□□□□□ -1.52
SDC1P18827 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.57□□□□□ -1.52
SDC1P18827 ZNF322P1-201ENST00000568013 1209 ntBASIC5.57□□□□□ -1.52
SDC1P18827 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.57□□□□□ -1.52
SDC1P18827 AC145423.1-201ENST00000605712 336 ntBASIC5.57□□□□□ -1.52
SDC1P18827 MIR6721-201ENST00000617181 87 ntBASIC5.57□□□□□ -1.52
SDC1P18827 MIR6813-201ENST00000621638 56 ntBASIC5.57□□□□□ -1.52
SDC1P18827 AL136228.1-201ENST00000622221 319 ntBASIC5.57□□□□□ -1.52
SDC1P18827 AC063952.1-203ENST00000634410 658 ntBASIC5.57□□□□□ -1.52
SDC1P18827 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 NCOA4P2-201ENST00000340589 1813 ntBASIC5.57□□□□□ -1.52
SDC1P18827 AC232271.1-201ENST00000602455 2715 ntBASIC5.57□□□□□ -1.52
SDC1P18827 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 AP004607.3-201ENST00000530354 3915 ntBASIC5.57□□□□□ -1.52
SDC1P18827 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.57□□□□□ -1.52
SDC1P18827 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SDC1P18827 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SDC1P18827 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.56□□□□□ -1.52
SDC1P18827 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SDC1P18827 RNU11-201ENST00000387069 134 ntBASIC5.56□□□□□ -1.52
SDC1P18827 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SDC1P18827 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.56□□□□□ -1.52
SDC1P18827 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.56□□□□□ -1.52
SDC1P18827 NPM1P25-201ENST00000429734 854 ntBASIC5.56□□□□□ -1.52
SDC1P18827 AC023141.8-201ENST00000442554 208 ntBASIC5.56□□□□□ -1.52
SDC1P18827 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 AC073072.2-201ENST00000447425 348 ntBASIC5.56□□□□□ -1.52
SDC1P18827 GEMIN2P1-201ENST00000454246 752 ntBASIC5.56□□□□□ -1.52
SDC1P18827 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.56□□□□□ -1.52
SDC1P18827 RNU1-88P-201ENST00000459274 128 ntBASIC5.56□□□□□ -1.52
SDC1P18827 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms