Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TTC28Q96AY4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.18■□□□□ 0.82
TTC28Q96AY4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TTC28Q96AY4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TTC28Q96AY4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TTC28Q96AY4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.17■□□□□ 0.82
TTC28Q96AY4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TTC28Q96AY4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TTC28Q96AY4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TTC28Q96AY4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TTC28Q96AY4 AC092597.1-201ENST00000487352 616 ntBASIC20.17■□□□□ 0.82
TTC28Q96AY4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 TERC-201ENST00000602385 541 ntBASIC20.17■□□□□ 0.82
TTC28Q96AY4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 PMS2P7-201ENST00000506558 1336 ntBASIC20.17■□□□□ 0.82
TTC28Q96AY4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TTC28Q96AY4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.17■□□□□ 0.82
TTC28Q96AY4 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 BX276092.5-203ENST00000456199 560 ntBASIC20.16■□□□□ 0.82
TTC28Q96AY4 PGAM5P1-201ENST00000518923 814 ntBASIC20.16■□□□□ 0.82
TTC28Q96AY4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 AL773604.1-201ENST00000617417 272 ntBASIC20.16■□□□□ 0.82
TTC28Q96AY4 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TTC28Q96AY4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.16■□□□□ 0.82
TTC28Q96AY4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TTC28Q96AY4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TTC28Q96AY4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TTC28Q96AY4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TTC28Q96AY4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.15■□□□□ 0.82
TTC28Q96AY4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TTC28Q96AY4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 CA15P1-201ENST00000481698 905 ntBASIC20.15■□□□□ 0.82
TTC28Q96AY4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.15■□□□□ 0.82
TTC28Q96AY4 AC064862.7-201ENST00000604520 867 ntBASIC20.15■□□□□ 0.82
TTC28Q96AY4 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TTC28Q96AY4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
TTC28Q96AY4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
TTC28Q96AY4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
TTC28Q96AY4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
TTC28Q96AY4 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TTC28Q96AY4 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TTC28Q96AY4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.14■□□□□ 0.81
TTC28Q96AY4 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TTC28Q96AY4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.14■□□□□ 0.81
TTC28Q96AY4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
TTC28Q96AY4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.14■□□□□ 0.81
TTC28Q96AY4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.14■□□□□ 0.81
TTC28Q96AY4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.14■□□□□ 0.81
TTC28Q96AY4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TTC28Q96AY4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TTC28Q96AY4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.14■□□□□ 0.81
TTC28Q96AY4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TTC28Q96AY4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TTC28Q96AY4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TTC28Q96AY4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TTC28Q96AY4 KRT18P67-201ENST00000432816 1264 ntBASIC20.13■□□□□ 0.81
TTC28Q96AY4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TTC28Q96AY4 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.13■□□□□ 0.81
TTC28Q96AY4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TTC28Q96AY4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TTC28Q96AY4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms