Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HSPG2P98160 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 AC127496.7-201ENST00000625110 1798 ntBASIC12.28□□□□□ -0.44
HSPG2P98160 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HSPG2P98160 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.28□□□□□ -0.44
HSPG2P98160 AC092597.1-201ENST00000487352 616 ntBASIC12.28□□□□□ -0.44
HSPG2P98160 FGF14-AS2-201ENST00000606448 1074 ntBASIC12.28□□□□□ -0.44
HSPG2P98160 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC12.28□□□□□ -0.44
HSPG2P98160 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC12.28□□□□□ -0.44
HSPG2P98160 LY6E-213ENST00000522528 606 ntTSL 3 BASIC12.28□□□□□ -0.44
HSPG2P98160 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 AC022898.2-201ENST00000616822 1312 ntBASIC12.28□□□□□ -0.44
HSPG2P98160 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC12.28□□□□□ -0.44
HSPG2P98160 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 STARP1-201ENST00000397973 869 ntBASIC12.28□□□□□ -0.44
HSPG2P98160 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC12.28□□□□□ -0.44
HSPG2P98160 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HSPG2P98160 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC12.28□□□□□ -0.44
HSPG2P98160 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC12.28□□□□□ -0.44
HSPG2P98160 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
HSPG2P98160 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC12.27□□□□□ -0.44
HSPG2P98160 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
HSPG2P98160 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
HSPG2P98160 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HSPG2P98160 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HSPG2P98160 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HSPG2P98160 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HSPG2P98160 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
HSPG2P98160 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC12.27□□□□□ -0.44
HSPG2P98160 Telomerase-vert.1-201ENST00000363312 438 ntBASIC12.27□□□□□ -0.44
HSPG2P98160 MIR574-201ENST00000385209 96 ntBASIC12.27□□□□□ -0.44
HSPG2P98160 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HSPG2P98160 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
HSPG2P98160 FAAHP1-202ENST00000446499 1238 ntBASIC12.27□□□□□ -0.44
HSPG2P98160 AC079781.3-201ENST00000449110 356 ntBASIC12.27□□□□□ -0.44
HSPG2P98160 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
HSPG2P98160 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC12.27□□□□□ -0.44
HSPG2P98160 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
HSPG2P98160 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
HSPG2P98160 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 TEX30-205ENST00000376029 959 ntTSL 2 BASIC12.27□□□□□ -0.45
HSPG2P98160 CALM3-202ENST00000391918 702 ntTSL 2 BASIC12.27□□□□□ -0.45
HSPG2P98160 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC12.27□□□□□ -0.45
HSPG2P98160 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 NEK4P2-201ENST00000580004 1012 ntBASIC12.27□□□□□ -0.45
HSPG2P98160 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC12.27□□□□□ -0.45
HSPG2P98160 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC12.27□□□□□ -0.45
HSPG2P98160 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC12.27□□□□□ -0.45
HSPG2P98160 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
HSPG2P98160 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC12.27□□□□□ -0.45
HSPG2P98160 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC12.27□□□□□ -0.45
HSPG2P98160 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
HSPG2P98160 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 RPP21-221ENST00000428040 594 ntTSL 2 BASIC12.27□□□□□ -0.45
HSPG2P98160 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC12.27□□□□□ -0.45
HSPG2P98160 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC12.27□□□□□ -0.45
HSPG2P98160 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC12.27□□□□□ -0.45
HSPG2P98160 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HSPG2P98160 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC12.26□□□□□ -0.45
HSPG2P98160 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC12.26□□□□□ -0.45
HSPG2P98160 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC12.26□□□□□ -0.45
HSPG2P98160 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms