Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC008676.3-201ENST00000521237 435 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 WBP1LP3-201ENST00000523033 208 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 RPA2P3-201ENST00000533268 770 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 TRAV11-201ENST00000539512 339 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC079600.1-201ENST00000550326 297 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC008555.7-201ENST00000605008 583 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 MIR6768-201ENST00000610734 72 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC005899.7-201ENST00000618199 588 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 Z93929.1-201ENST00000418200 1475 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC015689.2-201ENST00000528172 1738 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 SNORA11B-201ENST00000408175 129 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 RPS20P25-201ENST00000412447 352 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AL035660.1-201ENST00000422041 222 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 RFESDP1-201ENST00000422350 461 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AK3P5-201ENST00000432033 519 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 MRPS21P3-201ENST00000436696 262 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 PCBP2P1-201ENST00000437262 977 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 RN7SL273P-201ENST00000481561 299 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC027544.3-201ENST00000535082 757 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC093524.1-201ENST00000564266 1094 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 MIR6809-201ENST00000612189 116 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AL445649.1-201ENST00000615941 691 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC004836.1-201ENST00000623032 634 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC116667.2-201ENST00000641075 823 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AL596275.2-208ENST00000641192 594 ntBASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC3Q9BQI4 AP001541.1-201ENST00000623322 1904 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC011815.2-201ENST00000618230 2021 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms