Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 HIRAP1-201ENST00000605318 787 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 AL080312.2-201ENST00000613001 630 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 RNA5SP439-201ENST00000617595 124 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 AC010325.3-201ENST00000641084 394 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC42Q96M95 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC42Q96M95 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC42Q96M95 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC42Q96M95 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AL133260.1-201ENST00000405720 405 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 RN7SKP108-201ENST00000411367 328 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 RNGTTP1-201ENST00000420965 728 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 SETP9-201ENST00000423837 832 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 VN1R21P-201ENST00000426703 765 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 RPL5P2-201ENST00000429598 854 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 PA2G4P1-201ENST00000442248 1197 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 RBPJP7-201ENST00000442803 1447 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 RBPJP5-201ENST00000449433 1447 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 RN7SL552P-201ENST00000462094 276 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC023245.1-201ENST00000468501 517 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC42Q96M95 HMGN1P16-201ENST00000508308 283 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 TXNP4-201ENST00000575018 310 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 AL512652.1-201ENST00000619006 500 ntBASIC6.29□□□□□ -1.4
CCDC42Q96M95 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC42Q96M95 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC42Q96M95 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC42Q96M95 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC42Q96M95 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 AC023141.8-201ENST00000442554 208 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 AC004129.2-201ENST00000457229 287 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 OR7E22P-201ENST00000478335 1035 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 AP002453.1-201ENST00000492327 668 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 AC138517.1-201ENST00000515724 568 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 MRPS21P8-201ENST00000569196 235 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 NANOGP3-201ENST00000605855 286 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 AC092681.3-201ENST00000609463 678 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 MIR6737-201ENST00000617385 70 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 AC012254.3-201ENST00000591183 2117 ntBASIC6.28□□□□□ -1.4
CCDC42Q96M95 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC42Q96M95 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC42Q96M95 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.4
CCDC42Q96M95 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.27□□□□□ -1.4
CCDC42Q96M95 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC42Q96M95 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.27□□□□□ -1.41
CCDC42Q96M95 MIR188-201ENST00000385034 86 ntBASIC6.27□□□□□ -1.41
CCDC42Q96M95 AC117434.1-201ENST00000419971 836 ntBASIC6.27□□□□□ -1.41
CCDC42Q96M95 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC42Q96M95 AC010240.2-201ENST00000445363 1205 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms