Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 CPS1-IT1-201ENST00000628368 2306 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
FOXA3P55318 RNA5SP308-201ENST00000362532 115 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
FOXA3P55318 RNA5SP91-201ENST00000390902 119 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC4.37□□□□□ -1.71
FOXA3P55318 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 FTLP19-201ENST00000433300 394 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA3P55318 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 POU5F1P5-201ENST00000445059 658 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AC006539.1-201ENST00000481419 501 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 RPL38P3-201ENST00000484463 213 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AF305872.1-201ENST00000485217 471 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 MORF4L2P1-201ENST00000503761 858 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 MIR2117-201ENST00000516780 80 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 OR56A7P-201ENST00000524865 941 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 OTX2-203ENST00000554559 715 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA3P55318 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXA3P55318 AC024085.1-201ENST00000604299 432 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 AC096861.1-201ENST00000616652 240 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AC138965.3-201ENST00000623875 498 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AC021766.1-201ENST00000624404 741 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 RBMY1HP-201ENST00000382759 1389 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 AC119674.1-202ENST00000641333 1860 ntBASIC4.37□□□□□ -1.71
FOXA3P55318 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXA3P55318 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA3P55318 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA3P55318 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
FOXA3P55318 RN7SKP78-201ENST00000364711 318 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 RNA5SP431-201ENST00000410312 120 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 CDC42P6-201ENST00000421246 576 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC009784.1-201ENST00000426484 460 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 FECHP1-201ENST00000431896 1214 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC092106.1-201ENST00000444291 373 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 HIGD1AP16-201ENST00000450986 258 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA3P55318 AL133351.3-201ENST00000454998 193 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC010409.2-201ENST00000505780 478 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC097460.2-201ENST00000511857 741 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 RN7SKP64-201ENST00000517206 328 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA3P55318 IGLVVII-41-1-201ENST00000518405 151 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 OR4A17P-201ENST00000526032 904 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC4.36□□□□□ -1.71
FOXA3P55318 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC010287.1-201ENST00000566916 357 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXA3P55318 MIR7853-201ENST00000584820 132 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AC026898.1-201ENST00000586404 571 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AL589743.6-201ENST00000611025 117 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AC009283.1-201ENST00000615852 645 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXA3P55318 OXSM-209ENST00000626005 309 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXA3P55318 AL360270.2-201ENST00000562952 5985 ntBASIC4.36□□□□□ -1.71
FOXA3P55318 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC4.36□□□□□ -1.71
FOXA3P55318 AC144833.1-201ENST00000567953 4089 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms