Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC7□□□□□ -1.29
BRCA1P38398 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC7□□□□□ -1.29
BRCA1P38398 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
BRCA1P38398 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
BRCA1P38398 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
BRCA1P38398 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
BRCA1P38398 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC6.99□□□□□ -1.29
BRCA1P38398 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
BRCA1P38398 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
BRCA1P38398 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.99□□□□□ -1.29
BRCA1P38398 AL022237.1-201ENST00000446663 358 ntBASIC6.99□□□□□ -1.29
BRCA1P38398 AC008897.1-201ENST00000494006 347 ntBASIC6.99□□□□□ -1.29
BRCA1P38398 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.99□□□□□ -1.29
BRCA1P38398 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.99□□□□□ -1.29
BRCA1P38398 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.99□□□□□ -1.29
BRCA1P38398 AC234771.5-201ENST00000600161 514 ntBASIC6.99□□□□□ -1.29
BRCA1P38398 AC008745.1-201ENST00000604064 271 ntBASIC6.99□□□□□ -1.29
BRCA1P38398 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.99□□□□□ -1.29
BRCA1P38398 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.99□□□□□ -1.29
BRCA1P38398 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
BRCA1P38398 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 AC107398.3-201ENST00000562284 7000 ntBASIC6.99□□□□□ -1.29
BRCA1P38398 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.99□□□□□ -1.29
BRCA1P38398 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 AL133243.4-201ENST00000623116 3109 ntBASIC6.99□□□□□ -1.29
BRCA1P38398 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC6.99□□□□□ -1.29
BRCA1P38398 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.99□□□□□ -1.29
BRCA1P38398 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
BRCA1P38398 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 OR13K1P-201ENST00000444577 975 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 RPL7P45-201ENST00000455851 743 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 RNU6-941P-201ENST00000516346 108 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 AC126615.2-201ENST00000553003 515 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC6.98□□□□□ -1.29
BRCA1P38398 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 AC010245.2-201ENST00000606908 1167 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AC109583.2-201ENST00000617367 129 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
BRCA1P38398 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 MROH3P-201ENST00000435735 2676 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 AL360271.1-201ENST00000395679 510 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AC104837.2-201ENST00000427236 424 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.98□□□□□ -1.29
BRCA1P38398 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC6.98□□□□□ -1.29
BRCA1P38398 AC096741.1-201ENST00000472250 846 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 RPL37AP8-201ENST00000494116 276 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 BLZF2P-201ENST00000553776 1130 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AC209154.1-201ENST00000582156 337 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.98□□□□□ -1.29
BRCA1P38398 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.98□□□□□ -1.29
BRCA1P38398 AL157831.2-201ENST00000564681 3095 ntBASIC6.98□□□□□ -1.29
BRCA1P38398 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
BRCA1P38398 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC6.97□□□□□ -1.29
BRCA1P38398 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
BRCA1P38398 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms