Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 RBBP4P5-201ENST00000398583 1266 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 AL359885.1-201ENST00000415786 903 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.72□□□□□ -1.49
CLDN9O95484 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 AL445928.1-201ENST00000435545 222 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 RPSAP40-201ENST00000442343 891 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 RPL5P7-201ENST00000444235 813 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 AC114982.2-201ENST00000461396 358 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 AC090058.1-201ENST00000498788 435 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.72□□□□□ -1.49
CLDN9O95484 MIR2117-201ENST00000516780 80 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 RN7SKP183-201ENST00000517169 324 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.72□□□□□ -1.49
CLDN9O95484 AL121594.2-201ENST00000541658 472 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.72□□□□□ -1.49
CLDN9O95484 MIR4420-201ENST00000583944 77 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CLDN9O95484 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 AC068768.2-201ENST00000602352 343 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.72□□□□□ -1.49
CLDN9O95484 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.72□□□□□ -1.49
CLDN9O95484 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 MIR6721-201ENST00000617181 87 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.72□□□□□ -1.49
CLDN9O95484 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 HSPD1P9-201ENST00000420325 1636 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
CLDN9O95484 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 OR4G1P-202ENST00000641173 1788 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CLDN9O95484 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.72□□□□□ -1.49
CLDN9O95484 AC006600.2-201ENST00000624834 2506 ntBASIC5.72□□□□□ -1.49
CLDN9O95484 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
CLDN9O95484 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CLDN9O95484 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 PPBPP2-201ENST00000513150 1362 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.71□□□□□ -1.5
CLDN9O95484 AL078595.2-201ENST00000605309 1780 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 RNA5SP279-201ENST00000365513 117 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CLDN9O95484 RN7SKP86-201ENST00000410454 332 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 RNU2-18P-201ENST00000411224 162 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 RN7SKP17-201ENST00000411242 351 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 RPL35AP3-201ENST00000414680 288 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.71□□□□□ -1.5
CLDN9O95484 RPS4XP5-201ENST00000419038 768 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AC096775.1-201ENST00000437724 448 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AC104339.1-201ENST00000465478 348 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 ST13P12-201ENST00000508958 1094 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.71□□□□□ -1.5
CLDN9O95484 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.71□□□□□ -1.5
CLDN9O95484 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.71□□□□□ -1.5
CLDN9O95484 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.71□□□□□ -1.5
CLDN9O95484 AC023310.2-201ENST00000553844 547 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.71□□□□□ -1.5
CLDN9O95484 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.71□□□□□ -1.5
CLDN9O95484 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.71□□□□□ -1.5
CLDN9O95484 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 AC090826.1-203ENST00000569235 490 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.71□□□□□ -1.5
CLDN9O95484 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
CLDN9O95484 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.71□□□□□ -1.5
CLDN9O95484 AL133481.2-203ENST00000607558 139 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AC093388.1-201ENST00000609166 430 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.71□□□□□ -1.5
CLDN9O95484 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AL352984.2-202ENST00000613699 155 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AL157762.1-201ENST00000619612 415 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 AC010809.3-201ENST00000621310 641 ntBASIC5.71□□□□□ -1.5
CLDN9O95484 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLDN9O95484 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms