Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 EEF1A1P28-201ENST00000450915 1403 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC005832.2-201ENST00000538921 1430 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 Y_RNA.51-201ENST00000362725 102 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 PPIAP26-201ENST00000377951 522 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AL355379.1-201ENST00000405542 640 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RN7SKP268-201ENST00000411107 316 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 NMNAT1P3-201ENST00000457517 888 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RPS26P11-201ENST00000463445 348 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 HMGN1P8-201ENST00000463578 288 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC083806.1-201ENST00000468934 316 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RPS26P6-201ENST00000475156 348 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RN7SL382P-201ENST00000482631 282 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RN7SL518P-201ENST00000491887 280 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 SNORA58-201ENST00000505219 137 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 LTV1P1-201ENST00000510683 1237 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RN7SKP67-201ENST00000515905 235 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC087752.2-201ENST00000521219 281 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC107952.1-201ENST00000524200 376 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC084337.1-201ENST00000524809 686 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AP001994.1-201ENST00000527539 826 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RN7SL199P-201ENST00000578752 281 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RN7SL656P-201ENST00000579044 281 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 RN7SL404P-201ENST00000582421 281 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC020915.5-201ENST00000596836 964 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 5S_rRNA.23-201ENST00000612086 102 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AL138960.1-201ENST00000613838 513 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC126175.1-201ENST00000617041 758 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC093909.6-201ENST00000624757 775 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AL357562.1-201ENST00000624911 609 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC093278.2-201ENST00000564956 2485 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 AC011503.2-201ENST00000594230 1500 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 OR7E25P-201ENST00000344844 931 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL451046.1-201ENST00000406097 534 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL117344.1-201ENST00000407196 616 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 SNORA11D-201ENST00000408548 128 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 SNORA11E-201ENST00000408778 128 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 TEX41-203ENST00000420472 765 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 USP9YP26-201ENST00000421008 661 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL390023.1-201ENST00000428836 262 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 CR769776.1-201ENST00000441254 787 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC118469.1-201ENST00000442943 488 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 MTCYBP3-201ENST00000445588 1137 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL929410.2-201ENST00000451170 189 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 RPL31P3-201ENST00000458430 332 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 NAP1L1P3-201ENST00000462291 880 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC126615.1-201ENST00000470084 630 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 AC021146.8-201ENST00000507455 733 ntBASIC7.72□□□□□ -1.17
CCDC39Q9UFE4 MTCO3P7-201ENST00000510008 774 ntBASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms