Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 H3F3AP5-201ENST00000475267 429 ntBASIC6.32□□□□□ -1.4
CCDC42Q96M95 AC008629.2-201ENST00000503783 483 ntBASIC6.32□□□□□ -1.4
CCDC42Q96M95 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 NPIPB14P-203ENST00000532298 987 ntBASIC6.32□□□□□ -1.4
CCDC42Q96M95 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC42Q96M95 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 SMIM12P1-201ENST00000603004 274 ntBASIC6.32□□□□□ -1.4
CCDC42Q96M95 AP000550.3-201ENST00000637734 379 ntBASIC6.32□□□□□ -1.4
CCDC42Q96M95 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC42Q96M95 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC42Q96M95 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
CCDC42Q96M95 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC42Q96M95 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 PPBPP2-201ENST00000513150 1362 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC42Q96M95 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC42Q96M95 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC092451.3-201ENST00000625067 1343 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 AP004607.3-201ENST00000530354 3915 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 MFSD8-239ENST00000641590 2479 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC42Q96M95 RN7SKP78-201ENST00000364711 318 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AL158827.1-201ENST00000416300 391 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 MRPS21P2-201ENST00000424704 264 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 RPSAP65-201ENST00000429660 595 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 BX276092.6-201ENST00000430476 250 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC099670.2-201ENST00000435130 321 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 RPS12P17-201ENST00000438591 377 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 BX276092.8-201ENST00000455722 250 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 OR7E157P-201ENST00000494376 911 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 OR7E99P-201ENST00000505750 922 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC015712.7-201ENST00000615211 635 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 AC005618.4-201ENST00000625053 554 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC42Q96M95 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC42Q96M95 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 GNL2P1-201ENST00000451274 2190 ntBASIC6.31□□□□□ -1.4
CCDC42Q96M95 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC42Q96M95 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC42Q96M95 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC42Q96M95 FBXL21-201ENST00000297158 1305 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC42Q96M95 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC42Q96M95 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 RNA5SP110-201ENST00000362638 115 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 RNA5SP91-201ENST00000390902 119 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 U3.23-201ENST00000391132 200 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 RPS4XP5-201ENST00000419038 768 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 AC138761.5-201ENST00000433967 325 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 AL022324.2-201ENST00000434827 780 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 AL445928.1-201ENST00000435545 222 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 OR5D2P-201ENST00000524390 911 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 GARSP1-201ENST00000570895 719 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 RN7SL66P-201ENST00000582099 264 ntBASIC6.3□□□□□ -1.4
CCDC42Q96M95 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.3□□□□□ -1.4
CCDC42Q96M95 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms