Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC089998.1-201ENST00000548575 3141 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.63□□□□□ -1.51
FOXA1P55317 GCNT1P4-201ENST00000404096 329 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
FOXA1P55317 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC099670.2-201ENST00000435130 321 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 GAPDHP48-201ENST00000436626 961 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 AC023141.8-201ENST00000442554 208 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 RN7SL254P-201ENST00000460609 284 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 BTG1P1-201ENST00000540396 508 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.63□□□□□ -1.51
FOXA1P55317 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.63□□□□□ -1.51
FOXA1P55317 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.63□□□□□ -1.51
FOXA1P55317 HIRAP1-201ENST00000605318 787 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 AC145423.1-201ENST00000605712 336 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.63□□□□□ -1.51
FOXA1P55317 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.63□□□□□ -1.51
FOXA1P55317 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 MIR6809-201ENST00000612189 116 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 AC111152.1-202ENST00000635848 339 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.63□□□□□ -1.51
FOXA1P55317 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.63□□□□□ -1.51
FOXA1P55317 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
FOXA1P55317 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.63□□□□□ -1.51
FOXA1P55317 PARP4P2-201ENST00000446672 3326 ntBASIC5.63□□□□□ -1.51
FOXA1P55317 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.63□□□□□ -1.51
FOXA1P55317 AC239868.2-201ENST00000564237 4527 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
FOXA1P55317 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
FOXA1P55317 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
FOXA1P55317 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
FOXA1P55317 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 SNORA51.9-201ENST00000384295 124 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
FOXA1P55317 AL034417.1-201ENST00000399343 800 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 THEM7P-201ENST00000419556 672 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.62□□□□□ -1.51
FOXA1P55317 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.62□□□□□ -1.51
FOXA1P55317 AK3P5-201ENST00000432033 519 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
FOXA1P55317 HMGB1P7-201ENST00000450921 612 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC5.62□□□□□ -1.51
FOXA1P55317 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 AC105384.2-201ENST00000508433 640 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.62□□□□□ -1.51
FOXA1P55317 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.62□□□□□ -1.51
FOXA1P55317 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
FOXA1P55317 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.62□□□□□ -1.51
FOXA1P55317 AC091078.2-201ENST00000557145 559 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.62□□□□□ -1.51
FOXA1P55317 AC092332.1-201ENST00000563684 829 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
FOXA1P55317 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.62□□□□□ -1.51
FOXA1P55317 AC015712.7-201ENST00000615211 635 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 HTR1DP1-201ENST00000616500 888 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 PPBPP2-201ENST00000513150 1362 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.62□□□□□ -1.51
FOXA1P55317 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
FOXA1P55317 AC010329.1-201ENST00000593903 8328 ntBASIC5.62□□□□□ -1.51
FOXA1P55317 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
FOXA1P55317 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.62□□□□□ -1.51
FOXA1P55317 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXA1P55317 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 RNA5SP453-201ENST00000362503 119 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 RNA5SP514-201ENST00000363717 111 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 RN7SKP250-201ENST00000363924 321 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
FOXA1P55317 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
FOXA1P55317 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 AC121334.1-201ENST00000396414 802 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms