Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 AC006213.6-201ENST00000623722 4179 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 AL355377.1-201ENST00000621125 1653 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 AC034229.2-201ENST00000566945 2508 ntBASIC6.29□□□□□ -1.4
HOXA9P31269 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
HOXA9P31269 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXA9P31269 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 CCNT2P1-201ENST00000423082 1315 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.28□□□□□ -1.4
HOXA9P31269 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 RN7SKP77-201ENST00000363261 353 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXA9P31269 SNRPEP6-201ENST00000407465 277 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 RNU4-64P-201ENST00000410795 131 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 BMS1P17-202ENST00000416720 316 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 NME1P1-201ENST00000420914 382 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 BRWD1P3-201ENST00000428816 390 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.28□□□□□ -1.4
HOXA9P31269 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.28□□□□□ -1.4
HOXA9P31269 AL022237.1-201ENST00000446663 358 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 AC026348.1-201ENST00000462549 1053 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 RPS26P39-201ENST00000469206 341 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC6.28□□□□□ -1.4
HOXA9P31269 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.28□□□□□ -1.4
HOXA9P31269 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXA9P31269 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 AL589674.2-201ENST00000604304 337 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 AC024589.2-201ENST00000605642 1294 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 AL021368.3-201ENST00000607119 578 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 RPS2P45-201ENST00000469997 2057 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 AC096921.2-201ENST00000561507 1916 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 BX284613.1-201ENST00000452221 1641 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 AC063923.1-201ENST00000478982 1619 ntBASIC6.28□□□□□ -1.4
HOXA9P31269 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXA9P31269 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXA9P31269 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.28□□□□□ -1.4
HOXA9P31269 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HOXA9P31269 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.27□□□□□ -1.4
HOXA9P31269 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.27□□□□□ -1.41
HOXA9P31269 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXA9P31269 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
HOXA9P31269 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
HOXA9P31269 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HOXA9P31269 FUNDC2P3-201ENST00000334716 533 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 OR10R3P-201ENST00000361688 942 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 RNA5SP46-201ENST00000362370 120 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 RNA5SP132-201ENST00000364725 118 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AL391361.1-201ENST00000405580 489 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 OR3A2-201ENST00000408891 1076 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXA9P31269 BMS1P13-201ENST00000417301 885 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC6.27□□□□□ -1.41
HOXA9P31269 BX510359.3-201ENST00000422168 306 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC126120.1-201ENST00000431082 470 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 LDHAP2-201ENST00000437325 985 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC002504.1-201ENST00000438281 691 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.27□□□□□ -1.41
HOXA9P31269 AL451063.1-201ENST00000450164 1133 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC002075.1-201ENST00000457396 676 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC104164.1-201ENST00000460282 590 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 RPS17P15-201ENST00000475609 349 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 RN7SL629P-201ENST00000489622 285 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 RNA5SP362-201ENST00000516048 118 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC027308.1-201ENST00000517993 110 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
HOXA9P31269 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.27□□□□□ -1.41
HOXA9P31269 MIR4443-201ENST00000585052 53 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC020916.2-201ENST00000591242 360 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXA9P31269 TCL6_3.1-201ENST00000619064 137 ntBASIC6.27□□□□□ -1.41
HOXA9P31269 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
HOXA9P31269 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
HOXA9P31269 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
HOXA9P31269 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXA9P31269 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXA9P31269 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXA9P31269 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HOXA9P31269 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
HOXA9P31269 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
HOXA9P31269 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.27□□□□□ -1.41
HOXA9P31269 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
HOXA9P31269 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXA9P31269 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms