Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL391001.1-201ENST00000602747 715 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 AL049840.6-201ENST00000604583 345 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC7.63□□□□□ -1.19
COL3A1P02461 AC027279.4-201ENST00000624371 2072 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 AP002833.3-201ENST00000625075 2265 ntBASIC7.63□□□□□ -1.19
COL3A1P02461 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL3A1P02461 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL3A1P02461 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
COL3A1P02461 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.62□□□□□ -1.19
COL3A1P02461 AL451142.1-201ENST00000375867 775 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 KRT8P51-201ENST00000438938 274 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 AL390879.1-201ENST00000439143 386 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 VDAC2P4-201ENST00000452925 711 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC7.62□□□□□ -1.19
COL3A1P02461 AC074087.1-201ENST00000512059 724 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC7.62□□□□□ -1.19
COL3A1P02461 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC7.62□□□□□ -1.19
COL3A1P02461 MIR4302-201ENST00000638058 60 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 MAPK10-350ENST00000641777 965 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 YES1P1-201ENST00000418510 1628 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL3A1P02461 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC7.62□□□□□ -1.19
COL3A1P02461 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
COL3A1P02461 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL3A1P02461 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL3A1P02461 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL3A1P02461 RN7SKP293-201ENST00000411389 296 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 SDHDP6-201ENST00000414693 480 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.62□□□□□ -1.19
COL3A1P02461 CLUHP1-201ENST00000435012 1190 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 Z84478.1-201ENST00000438230 1219 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.62□□□□□ -1.19
COL3A1P02461 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC7.62□□□□□ -1.19
COL3A1P02461 AL450023.1-201ENST00000450868 751 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 RSU1P1-201ENST00000453416 441 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC7.62□□□□□ -1.19
COL3A1P02461 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.62□□□□□ -1.19
COL3A1P02461 SCARNA21.2-201ENST00000516600 166 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC7.62□□□□□ -1.19
COL3A1P02461 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC7.62□□□□□ -1.19
COL3A1P02461 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC7.62□□□□□ -1.19
COL3A1P02461 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC7.62□□□□□ -1.19
COL3A1P02461 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.62□□□□□ -1.19
COL3A1P02461 AL353729.2-201ENST00000605859 1249 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 AL158211.2-201ENST00000607282 395 ntBASIC7.62□□□□□ -1.19
COL3A1P02461 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC7.61□□□□□ -1.19
COL3A1P02461 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.61□□□□□ -1.19
COL3A1P02461 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC7.61□□□□□ -1.19
COL3A1P02461 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
COL3A1P02461 RNA5SP132-201ENST00000364725 118 ntBASIC7.61□□□□□ -1.19
COL3A1P02461 RPS6P23-201ENST00000413224 722 ntBASIC7.61□□□□□ -1.19
COL3A1P02461 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC7.61□□□□□ -1.19
COL3A1P02461 AC011225.1-201ENST00000457751 369 ntBASIC7.61□□□□□ -1.19
COL3A1P02461 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC7.61□□□□□ -1.19
COL3A1P02461 AC021678.3-201ENST00000517893 476 ntBASIC7.61□□□□□ -1.19
COL3A1P02461 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
COL3A1P02461 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC7.61□□□□□ -1.19
COL3A1P02461 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
COL3A1P02461 AL163952.1-202ENST00000569625 600 ntBASIC7.61□□□□□ -1.19
COL3A1P02461 CASC22-201ENST00000569713 386 ntTSL 5 BASIC7.61□□□□□ -1.19
COL3A1P02461 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.61□□□□□ -1.19
COL3A1P02461 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC7.61□□□□□ -1.19
COL3A1P02461 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC7.61□□□□□ -1.19
COL3A1P02461 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL3A1P02461 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC7.6□□□□□ -1.19
COL3A1P02461 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
COL3A1P02461 AC068733.2-201ENST00000605434 1418 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
COL3A1P02461 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC7.6□□□□□ -1.19
COL3A1P02461 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 ZNF812P-201ENST00000457674 1694 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL3A1P02461 CDC123-202ENST00000378900 933 ntTSL 5 BASIC7.6□□□□□ -1.19
COL3A1P02461 OR6E1P-201ENST00000414424 923 ntBASIC7.6□□□□□ -1.19
COL3A1P02461 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms