Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL049874.4-201ENST00000557593 255 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC009094.1-201ENST00000564443 426 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL021997.1-201ENST00000605757 193 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL352984.2-202ENST00000613699 155 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 MIR6736-201ENST00000616799 59 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC005261.4-201ENST00000600047 1385 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 HSPD1P8-201ENST00000400121 1658 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 RPL24P4-201ENST00000326586 421 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 RNA5SP65-201ENST00000363166 119 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 IGFL2-201ENST00000377693 607 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 SOD1P1-201ENST00000407803 440 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC096537.2-201ENST00000413707 714 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC007064.3-201ENST00000422608 359 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL139415.1-201ENST00000424862 352 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC013262.1-201ENST00000426710 252 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC009362.1-201ENST00000427253 406 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 Z85994.2-201ENST00000434327 452 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 EXTL2P1-201ENST00000446218 416 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL929288.2-201ENST00000446368 407 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 GOT2P2-201ENST00000450663 1251 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 MED28P7-201ENST00000456611 530 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 RPS4XP19-201ENST00000460237 736 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 RN7SL456P-201ENST00000469290 295 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 RN7SL561P-201ENST00000488553 281 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC010306.1-201ENST00000523223 1117 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 GCSHP4-201ENST00000538792 439 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 NF1P12-201ENST00000549593 583 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL135978.1-201ENST00000553618 1266 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AL109628.1-201ENST00000556877 366 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC090888.3-201ENST00000558917 509 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC090666.1-201ENST00000578241 445 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC083760.1-201ENST00000589621 670 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC020914.7-201ENST00000594477 545 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AP003465.2-201ENST00000602571 373 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC067838.1-201ENST00000606064 577 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC004908.1-201ENST00000606572 541 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC010975.3-201ENST00000618727 978 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC095038.2-201ENST00000621464 1070 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC127071.2-201ENST00000623293 527 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC012254.5-201ENST00000623573 478 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC008626.2-201ENST00000624425 248 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 AC017037.3-201ENST00000625016 472 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 MAPK10-261ENST00000641050 3109 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 CA10-204ENST00000570565 2276 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 ATP5BP1-201ENST00000411980 1574 ntBASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC39Q9UFE4 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 MTND4P29-201ENST00000503122 1372 ntBASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC39Q9UFE4 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms