Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 TMEM209-206ENST00000473456 1961 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 PABPC5-201ENST00000312600 3221 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 HKR1-201ENST00000324411 2929 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 PTTG1-201ENST00000352433 753 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 Y_RNA.209-201ENST00000364156 111 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 C1orf131-203ENST00000366651 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AMELY-202ENST00000383036 621 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 RNU6-729P-201ENST00000384399 107 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 MIR555-201ENST00000384987 96 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 MIR614-201ENST00000385082 90 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 SNORA35-201ENST00000386104 128 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 EI24P3-201ENST00000399046 1062 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC136624.1-201ENST00000400791 413 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL596448.1-201ENST00000415024 392 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC003071.2-201ENST00000423857 315 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC097468.2-201ENST00000429343 553 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC099344.1-201ENST00000433548 492 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 LINC01805-201ENST00000436433 572 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL353572.1-201ENST00000442490 417 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC074257.1-201ENST00000446340 585 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 NPIPB5-207ENST00000451409 3660 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 MARK2P10-201ENST00000454959 1437 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 DHX57-203ENST00000457308 4859 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 RPL10P6-201ENST00000457497 318 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 RNA5SP269-201ENST00000459032 137 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 GYG1P1-201ENST00000460864 698 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 RPL23AP71-201ENST00000470966 469 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC096751.1-202ENST00000502691 1067 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 ARL2BPP4-201ENST00000506854 471 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 DKK2-204ENST00000513208 925 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 IGKV2-36-201ENST00000519999 223 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC092818.1-201ENST00000523411 639 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AP001000.1-201ENST00000526843 742 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AP004833.3-201ENST00000531893 322 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 OR6C7P-201ENST00000547875 934 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 TRAV15-201ENST00000556680 249 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL133241.1-201ENST00000556832 487 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC103740.1-204ENST00000557994 570 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC009119.1-204ENST00000561599 564 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC099508.2-201ENST00000563098 510 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 MIR3137-201ENST00000577367 75 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 MIR4793-201ENST00000577502 87 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL157899.1-201ENST00000604110 936 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL451085.1-201ENST00000604546 690 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL355073.2-201ENST00000612106 557 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 IGKV1OR1-1-201ENST00000613775 347 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC138904.2-201ENST00000614412 107 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC233702.2-201ENST00000618784 583 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC005790.1-201ENST00000619774 450 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 MKKS-204ENST00000639674 192 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 LGI1-211ENST00000630047 1751 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AL049844.3-201ENST00000454207 1496 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 HCG18-244ENST00000602516 2890 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 PSMC1P7-201ENST00000495689 1315 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 FKTN-202ENST00000357998 2404 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC079949.2-201ENST00000617117 2933 ntBASIC5.95□□□□□ -1.46
CCDC140Q96MF4 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC140Q96MF4 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms