Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HPS3Q969F9 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
HPS3Q969F9 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.94□□□□□ -1.3
HPS3Q969F9 AC110792.3-201ENST00000595906 1614 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.94□□□□□ -1.3
HPS3Q969F9 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.94□□□□□ -1.3
HPS3Q969F9 AC034229.2-201ENST00000566945 2508 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 AC079753.1-201ENST00000623243 3868 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
HPS3Q969F9 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 SNORD8-201ENST00000363915 110 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 RBBP4P5-201ENST00000398583 1266 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 RN7SKP146-201ENST00000410242 334 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC6.94□□□□□ -1.3
HPS3Q969F9 AL360013.1-201ENST00000419031 858 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.94□□□□□ -1.3
HPS3Q969F9 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC6.94□□□□□ -1.3
HPS3Q969F9 EIF2S2P4-201ENST00000461070 984 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 AC104629.2-201ENST00000468627 598 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 RN7SL643P-201ENST00000471845 291 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 RPL12P31-201ENST00000478433 450 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 STRADBP1-201ENST00000478954 1281 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC6.94□□□□□ -1.3
HPS3Q969F9 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.94□□□□□ -1.3
HPS3Q969F9 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.94□□□□□ -1.3
HPS3Q969F9 HMGN1P16-201ENST00000508308 283 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 OR4D12P-201ENST00000509361 911 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC6.94□□□□□ -1.3
HPS3Q969F9 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC6.94□□□□□ -1.3
HPS3Q969F9 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.94□□□□□ -1.3
HPS3Q969F9 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC6.94□□□□□ -1.3
HPS3Q969F9 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.94□□□□□ -1.3
HPS3Q969F9 NDUFB9P1-201ENST00000604683 510 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 AL450270.1-201ENST00000606160 391 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 AC022919.1-201ENST00000624979 626 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC6.94□□□□□ -1.3
HPS3Q969F9 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 OR7A1P-202ENST00000641542 1158 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
HPS3Q969F9 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HPS3Q969F9 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.94□□□□□ -1.3
HPS3Q969F9 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.94□□□□□ -1.3
HPS3Q969F9 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.94□□□□□ -1.3
HPS3Q969F9 HDAC1P2-201ENST00000453661 1398 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.94□□□□□ -1.3
HPS3Q969F9 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.94□□□□□ -1.3
HPS3Q969F9 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.93□□□□□ -1.3
HPS3Q969F9 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 AL121768.1-201ENST00000613917 2544 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.93□□□□□ -1.3
HPS3Q969F9 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
HPS3Q969F9 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.93□□□□□ -1.3
HPS3Q969F9 PTGES3P2-201ENST00000407942 482 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 RN7SKP121-201ENST00000410842 305 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AC094019.1-201ENST00000434678 472 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 LDHAP2-201ENST00000437325 985 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.93□□□□□ -1.3
HPS3Q969F9 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.93□□□□□ -1.3
HPS3Q969F9 RAB28P3-201ENST00000448325 597 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 RANP2-201ENST00000456833 229 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AL022319.1-201ENST00000458183 1167 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 AC004890.1-201ENST00000461005 181 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 RPS7P10-201ENST00000464254 603 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 RPL17P2-201ENST00000491913 451 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HPS3Q969F9 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 RNA5SP116-201ENST00000516132 98 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AP001000.1-201ENST00000526843 742 ntBASIC6.93□□□□□ -1.3
HPS3Q969F9 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.93□□□□□ -1.3
HPS3Q969F9 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms