Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RN7SKP166-201ENST00000410812 305 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 AL096829.1-201ENST00000413677 457 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.36□□□□□ -1.39
PTPN9P43378 AL731534.1-201ENST00000434711 269 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 H3F3BP1-201ENST00000440551 403 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 RPL5P7-201ENST00000444235 813 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 TIMM8BP2-201ENST00000445940 251 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC6.36□□□□□ -1.39
PTPN9P43378 HMGB1P7-201ENST00000450921 612 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 AL445687.2-201ENST00000458156 728 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 SLC25A51P1-201ENST00000468432 871 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.36□□□□□ -1.39
PTPN9P43378 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.36□□□□□ -1.39
PTPN9P43378 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.36□□□□□ -1.39
PTPN9P43378 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.36□□□□□ -1.39
PTPN9P43378 GLYATL1P2-202ENST00000588046 902 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC6.36□□□□□ -1.39
PTPN9P43378 AL359091.2-201ENST00000609303 556 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC096586.2-201ENST00000610260 441 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC096861.1-201ENST00000616652 240 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 MIR6721-201ENST00000617181 87 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.36□□□□□ -1.39
PTPN9P43378 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.36□□□□□ -1.39
PTPN9P43378 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.35□□□□□ -1.39
PTPN9P43378 PPBPP2-201ENST00000513150 1362 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 AC092724.1-201ENST00000624623 3397 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.35□□□□□ -1.39
PTPN9P43378 OR2W4P-201ENST00000406496 926 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 AL590399.4-201ENST00000436561 601 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 SEPT14P12-201ENST00000442280 560 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 PPIAP7-201ENST00000454070 489 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 AL356390.1-201ENST00000455684 397 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 YRDCP3-201ENST00000456507 480 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 AC005165.2-201ENST00000466070 380 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.35□□□□□ -1.39
PTPN9P43378 RPL23AP40-201ENST00000487630 390 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 RWDD4P1-201ENST00000488019 565 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 AC021146.10-201ENST00000515628 706 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC6.35□□□□□ -1.39
PTPN9P43378 AP000620.1-201ENST00000527147 504 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.35□□□□□ -1.39
PTPN9P43378 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 AC023310.2-201ENST00000553844 547 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.35□□□□□ -1.39
PTPN9P43378 AL136370.1-201ENST00000608166 691 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 MIR6889-201ENST00000613185 59 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 AL512652.1-201ENST00000619006 500 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.35□□□□□ -1.39
PTPN9P43378 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.35□□□□□ -1.39
PTPN9P43378 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
PTPN9P43378 AL022323.4-201ENST00000623980 13120 ntBASIC6.35□□□□□ -1.39
PTPN9P43378 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
PTPN9P43378 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
PTPN9P43378 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.34□□□□□ -1.39
PTPN9P43378 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
PTPN9P43378 AC005225.5-201ENST00000623547 2225 ntBASIC6.34□□□□□ -1.39
PTPN9P43378 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
PTPN9P43378 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms