Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX3P41225 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SOX3P41225 MIR3189-201ENST00000578735 73 ntBASIC5.69□□□□□ -1.5
SOX3P41225 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.69□□□□□ -1.5
SOX3P41225 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX3P41225 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 MIR6778-201ENST00000617912 73 ntBASIC5.69□□□□□ -1.5
SOX3P41225 AC069234.4-201ENST00000621276 412 ntBASIC5.69□□□□□ -1.5
SOX3P41225 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 OR7A1P-202ENST00000641542 1158 ntBASIC5.69□□□□□ -1.5
SOX3P41225 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX3P41225 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SOX3P41225 AP001157.1-201ENST00000550837 2339 ntBASIC5.69□□□□□ -1.5
SOX3P41225 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX3P41225 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 AC123769.1-201ENST00000530992 3192 ntBASIC5.68□□□□□ -1.5
SOX3P41225 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX3P41225 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX3P41225 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 MIR130B-202ENST00000385018 82 ntBASIC5.68□□□□□ -1.5
SOX3P41225 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 AL390879.1-201ENST00000439143 386 ntBASIC5.68□□□□□ -1.5
SOX3P41225 HMGN1P2-201ENST00000445197 310 ntBASIC5.68□□□□□ -1.5
SOX3P41225 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 AC008676.3-201ENST00000521237 435 ntBASIC5.68□□□□□ -1.5
SOX3P41225 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 CYCSP38-201ENST00000559840 322 ntBASIC5.68□□□□□ -1.5
SOX3P41225 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 AC008507.3-201ENST00000585753 472 ntBASIC5.68□□□□□ -1.5
SOX3P41225 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 AP001267.4-201ENST00000602598 545 ntBASIC5.68□□□□□ -1.5
SOX3P41225 AC008555.7-201ENST00000605008 583 ntBASIC5.68□□□□□ -1.5
SOX3P41225 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 AC016590.3-201ENST00000611171 753 ntBASIC5.68□□□□□ -1.5
SOX3P41225 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX3P41225 MIR1910-201ENST00000636955 80 ntBASIC5.68□□□□□ -1.5
SOX3P41225 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 AC011416.1-201ENST00000514947 1732 ntBASIC5.68□□□□□ -1.5
SOX3P41225 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX3P41225 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX3P41225 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX3P41225 AC007998.4-201ENST00000612496 2533 ntBASIC5.68□□□□□ -1.5
SOX3P41225 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX3P41225 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SOX3P41225 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX3P41225 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.67□□□□□ -1.5
SOX3P41225 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.67□□□□□ -1.5
SOX3P41225 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.67□□□□□ -1.5
SOX3P41225 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SOX3P41225 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SOX3P41225 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 AC004386.1-201ENST00000393214 761 ntBASIC5.67□□□□□ -1.5
SOX3P41225 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SOX3P41225 AC016027.5-201ENST00000427227 210 ntBASIC5.67□□□□□ -1.5
SOX3P41225 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.67□□□□□ -1.5
SOX3P41225 AL451063.1-201ENST00000450164 1133 ntBASIC5.67□□□□□ -1.5
SOX3P41225 RPL7L1P3-201ENST00000455249 689 ntBASIC5.67□□□□□ -1.5
SOX3P41225 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 AL035690.1-201ENST00000490892 383 ntBASIC5.67□□□□□ -1.5
SOX3P41225 PRMT5P1-201ENST00000514351 598 ntBASIC5.67□□□□□ -1.5
SOX3P41225 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms