Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC8.53□□□□□ -1.04
COL9A1P20849 RN7SL12P-201ENST00000473849 290 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AL135752.1-201ENST00000479477 471 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 RN7SL89P-201ENST00000480252 283 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 RN7SL267P-201ENST00000485107 261 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC023194.1-201ENST00000493084 308 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 AC111198.1-201ENST00000505575 606 ntTSL 4 BASIC8.53□□□□□ -1.04
COL9A1P20849 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 MTND5P4-201ENST00000514978 288 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 RNA5SP459-201ENST00000516628 100 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 IGLV1-41-201ENST00000519790 406 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AP005902.1-201ENST00000521358 186 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 LINC02289-202ENST00000556781 861 ntTSL 3 BASIC8.53□□□□□ -1.04
COL9A1P20849 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC8.53□□□□□ -1.04
COL9A1P20849 AC015909.4-201ENST00000577175 578 ntTSL 4 BASIC8.53□□□□□ -1.04
COL9A1P20849 AC024614.1-201ENST00000577546 307 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 RN7SL785P-201ENST00000578437 253 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 MIR4443-201ENST00000585052 53 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 AC024085.1-201ENST00000604299 432 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC080078.3-201ENST00000605407 463 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC093635.1-201ENST00000609028 555 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 MIR6862-1-201ENST00000613016 70 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AC093913.1-201ENST00000614178 329 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 MIR6862-2-201ENST00000614755 70 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 AP001442.1-201ENST00000617755 659 ntTSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 AC007347.2-201ENST00000623044 180 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 ITPRIPL1-201ENST00000361124 4295 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 AL445531.1-201ENST00000562653 1728 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 DENND1B-201ENST00000235453 2195 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 MCTP1-205ENST00000505208 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 DIAPH3-202ENST00000377908 3549 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 MYEF2-202ENST00000324324 10360 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 DLGAP5-201ENST00000247191 2973 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 AL449283.1-201ENST00000602631 3403 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 TRPM3-211ENST00000396280 4671 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 AP002765.1-201ENST00000528675 1507 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 DICER1-204ENST00000527414 6179 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 SCRN1-206ENST00000426154 5275 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
COL9A1P20849 MTHFD1-201ENST00000216605 3136 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 TMPRSS11B-201ENST00000332644 2671 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 RAB36-201ENST00000263116 3828 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 GBP4-201ENST00000355754 6127 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
COL9A1P20849 PLS3-AS1-202ENST00000607680 1763 ntTSL 2 BASIC8.53□□□□□ -1.04
COL9A1P20849 GDI2P1-201ENST00000429312 1336 ntBASIC8.53□□□□□ -1.04
COL9A1P20849 IL17RD-202ENST00000320057 4474 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
COL9A1P20849 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
COL9A1P20849 SPP1-201ENST00000237623 1581 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.04
COL9A1P20849 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.04
COL9A1P20849 AC020951.1-201ENST00000624361 2271 ntBASIC8.52□□□□□ -1.04
COL9A1P20849 LIN54-202ENST00000442461 4254 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
COL9A1P20849 NMD3P1-201ENST00000439704 1488 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 RPGRIP1L-210ENST00000568653 2429 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 TEX11-203ENST00000374333 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 PREPL-202ENST00000378511 2315 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 SLF2-203ENST00000370271 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 PAPPA2-201ENST00000367661 4369 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 RNF214-204ENST00000530849 2846 ntTSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 ZNF236-201ENST00000253159 8124 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC8.52□□□□□ -1.05
COL9A1P20849 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 Y_RNA.184-201ENST00000363884 108 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 HBS1L-202ENST00000367820 638 ntTSL 3 BASIC8.52□□□□□ -1.05
COL9A1P20849 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 MIR191-201ENST00000384873 92 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
COL9A1P20849 RNU6-1106P-201ENST00000390845 107 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 RNU2-3P-201ENST00000410144 191 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 RNU6-195P-201ENST00000411352 109 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 NPM1P40-201ENST00000412758 733 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
COL9A1P20849 AC244157.1-201ENST00000415642 163 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC005033.1-201ENST00000428904 813 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 DYNLL1P7-201ENST00000429273 258 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC079807.1-201ENST00000429993 481 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC8.52□□□□□ -1.05
COL9A1P20849 BMS1P19-201ENST00000433925 393 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 LYPLA1P1-201ENST00000434514 622 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 PPIAP17-201ENST00000438507 471 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC8.52□□□□□ -1.05
COL9A1P20849 GGT3P-203ENST00000445651 368 ntTSL 2 BASIC8.52□□□□□ -1.05
COL9A1P20849 AC092634.4-203ENST00000451395 448 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 TCEAL4P1-201ENST00000453620 588 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AL034397.1-201ENST00000456392 908 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 SSR1-203ENST00000462112 1094 ntTSL 4 BASIC8.52□□□□□ -1.05
COL9A1P20849 HMGN2P26-201ENST00000463169 339 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC8.52□□□□□ -1.05
COL9A1P20849 AC008620.1-201ENST00000468453 592 ntBASIC8.52□□□□□ -1.05
COL9A1P20849 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC8.52□□□□□ -1.05
COL9A1P20849 COX6B1P2-201ENST00000489624 230 ntBASIC8.52□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms