Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
MSH3P20585 RPSAP40-201ENST00000442343 891 ntBASIC6.05□□□□□ -1.44
MSH3P20585 RPL6P30-201ENST00000443382 862 ntBASIC6.05□□□□□ -1.44
MSH3P20585 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC6.05□□□□□ -1.44
MSH3P20585 AC068491.1-201ENST00000449539 1241 ntBASIC6.05□□□□□ -1.44
MSH3P20585 CTSLP6-201ENST00000458273 1002 ntBASIC6.05□□□□□ -1.44
MSH3P20585 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.05□□□□□ -1.44
MSH3P20585 RNA5SP434-201ENST00000516647 121 ntBASIC6.05□□□□□ -1.44
MSH3P20585 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.05□□□□□ -1.44
MSH3P20585 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.05□□□□□ -1.44
MSH3P20585 AC024405.1-201ENST00000532521 1042 ntBASIC6.05□□□□□ -1.44
MSH3P20585 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 AC026826.3-201ENST00000561747 158 ntBASIC6.05□□□□□ -1.44
MSH3P20585 MIR4420-201ENST00000583944 77 ntBASIC6.05□□□□□ -1.44
MSH3P20585 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.05□□□□□ -1.44
MSH3P20585 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.05□□□□□ -1.44
MSH3P20585 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 AC027334.1-201ENST00000603257 310 ntBASIC6.05□□□□□ -1.44
MSH3P20585 AC018690.1-201ENST00000608144 626 ntBASIC6.05□□□□□ -1.44
MSH3P20585 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 AC007342.9-201ENST00000623877 1385 ntBASIC6.05□□□□□ -1.44
MSH3P20585 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
MSH3P20585 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 AC104966.1-201ENST00000467010 1464 ntBASIC6.04□□□□□ -1.44
MSH3P20585 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
MSH3P20585 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
MSH3P20585 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
MSH3P20585 RNA5SP110-201ENST00000362638 115 ntBASIC6.04□□□□□ -1.44
MSH3P20585 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.04□□□□□ -1.44
MSH3P20585 AC240504.1-201ENST00000395709 845 ntBASIC6.04□□□□□ -1.44
MSH3P20585 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.04□□□□□ -1.44
MSH3P20585 AL096829.1-201ENST00000413677 457 ntBASIC6.04□□□□□ -1.44
MSH3P20585 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.04□□□□□ -1.44
MSH3P20585 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.04□□□□□ -1.44
MSH3P20585 AC015977.1-201ENST00000418887 292 ntBASIC6.04□□□□□ -1.44
MSH3P20585 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.04□□□□□ -1.44
MSH3P20585 RPL23AP60-201ENST00000450011 454 ntBASIC6.04□□□□□ -1.44
MSH3P20585 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC6.04□□□□□ -1.44
MSH3P20585 AC098847.1-201ENST00000473094 348 ntBASIC6.04□□□□□ -1.44
MSH3P20585 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.04□□□□□ -1.44
MSH3P20585 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.04□□□□□ -1.44
MSH3P20585 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.04□□□□□ -1.44
MSH3P20585 OR56A7P-201ENST00000524865 941 ntBASIC6.04□□□□□ -1.44
MSH3P20585 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC6.04□□□□□ -1.44
MSH3P20585 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
MSH3P20585 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.04□□□□□ -1.44
MSH3P20585 AC092332.1-201ENST00000563684 829 ntBASIC6.04□□□□□ -1.44
MSH3P20585 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.04□□□□□ -1.44
MSH3P20585 GLYATL1P2-202ENST00000588046 902 ntBASIC6.04□□□□□ -1.44
MSH3P20585 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 AC091167.5-201ENST00000605689 894 ntBASIC6.04□□□□□ -1.44
MSH3P20585 AL645933.2-201ENST00000606743 1207 ntBASIC6.04□□□□□ -1.44
MSH3P20585 AL357153.4-201ENST00000620487 1016 ntBASIC6.04□□□□□ -1.44
MSH3P20585 AC073593.1-201ENST00000624500 411 ntBASIC6.04□□□□□ -1.44
MSH3P20585 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 MTCO1P28-201ENST00000574177 1528 ntBASIC6.04□□□□□ -1.44
MSH3P20585 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.04□□□□□ -1.44
MSH3P20585 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSH3P20585 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 ZNF101P1-201ENST00000435701 1720 ntBASIC6.03□□□□□ -1.44
MSH3P20585 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSH3P20585 AC107977.1-201ENST00000355745 939 ntBASIC6.03□□□□□ -1.44
MSH3P20585 RNU105B-201ENST00000364478 208 ntBASIC6.03□□□□□ -1.44
MSH3P20585 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
MSH3P20585 VN1R12P-201ENST00000403778 876 ntBASIC6.03□□□□□ -1.44
MSH3P20585 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.03□□□□□ -1.44
MSH3P20585 RNU2-18P-201ENST00000411224 162 ntBASIC6.03□□□□□ -1.44
MSH3P20585 RPS15AP30-201ENST00000420976 390 ntBASIC6.03□□□□□ -1.44
MSH3P20585 RPL24P2-201ENST00000421023 475 ntBASIC6.03□□□□□ -1.44
MSH3P20585 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.03□□□□□ -1.44
MSH3P20585 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms