Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC008083.2-201ENST00000546707 476 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC7.72□□□□□ -1.17
HMGB1P09429 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC7.72□□□□□ -1.17
HMGB1P09429 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC7.72□□□□□ -1.17
HMGB1P09429 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC7.72□□□□□ -1.17
HMGB1P09429 IGKV2OR2-10-201ENST00000613976 311 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 AL132640.3-201ENST00000630473 177 ntBASIC7.72□□□□□ -1.17
HMGB1P09429 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
HMGB1P09429 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC7.72□□□□□ -1.17
HMGB1P09429 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC7.72□□□□□ -1.17
HMGB1P09429 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC7.72□□□□□ -1.17
HMGB1P09429 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.72□□□□□ -1.17
HMGB1P09429 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
HMGB1P09429 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.72□□□□□ -1.17
HMGB1P09429 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
HMGB1P09429 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
HMGB1P09429 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC7.71□□□□□ -1.17
HMGB1P09429 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.71□□□□□ -1.17
HMGB1P09429 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.17
HMGB1P09429 AC105235.1-201ENST00000623208 1816 ntBASIC7.71□□□□□ -1.17
HMGB1P09429 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
HMGB1P09429 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
HMGB1P09429 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC7.71□□□□□ -1.17
HMGB1P09429 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC7.71□□□□□ -1.17
HMGB1P09429 AC006484.1-201ENST00000435086 1884 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
HMGB1P09429 RN7SKP257-201ENST00000364525 309 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.71□□□□□ -1.18
HMGB1P09429 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC7.71□□□□□ -1.18
HMGB1P09429 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
HMGB1P09429 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 AC018639.1-201ENST00000492994 442 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC7.71□□□□□ -1.18
HMGB1P09429 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC7.71□□□□□ -1.18
HMGB1P09429 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC7.71□□□□□ -1.18
HMGB1P09429 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
HMGB1P09429 OR4A40P-201ENST00000533878 948 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 CHEK2P2-201ENST00000554701 672 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 AL049870.4-201ENST00000555741 486 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 AC026956.1-201ENST00000558741 396 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC7.71□□□□□ -1.18
HMGB1P09429 RPL29P33-201ENST00000587474 316 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC7.71□□□□□ -1.18
HMGB1P09429 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7.71□□□□□ -1.18
HMGB1P09429 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 OR4H6P-202ENST00000603819 340 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 MIR6883-201ENST00000614952 78 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 TCL6_3.1-201ENST00000619064 137 ntBASIC7.71□□□□□ -1.18
HMGB1P09429 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
HMGB1P09429 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
HMGB1P09429 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC7.71□□□□□ -1.18
HMGB1P09429 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
HMGB1P09429 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC7.71□□□□□ -1.18
HMGB1P09429 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
HMGB1P09429 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC7.7□□□□□ -1.18
HMGB1P09429 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC7.7□□□□□ -1.18
HMGB1P09429 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 TEK-202ENST00000406359 3935 ntTSL 2 BASIC7.7□□□□□ -1.18
HMGB1P09429 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 AC008957.3-201ENST00000624112 2242 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 SNORD51.1-201ENST00000365405 77 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 U3.52-201ENST00000384034 216 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
HMGB1P09429 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 AL353626.3-201ENST00000413399 657 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 AC009302.1-201ENST00000417147 390 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 AC097721.1-201ENST00000427150 1253 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC7.7□□□□□ -1.18
HMGB1P09429 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
HMGB1P09429 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC7.7□□□□□ -1.18
HMGB1P09429 VN1R38P-201ENST00000450265 887 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 TAAR4P-201ENST00000454843 1039 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC7.7□□□□□ -1.18
HMGB1P09429 CCNJP2-201ENST00000457810 1163 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 RN7SL72P-201ENST00000460697 269 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.7□□□□□ -1.18
HMGB1P09429 AC093663.2-201ENST00000484625 313 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC7.7□□□□□ -1.18
HMGB1P09429 AC093890.1-201ENST00000502554 540 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 NREP-217ENST00000509025 987 ntTSL 3 BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms