Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ZNF602P-201ENST00000405929 924 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AF274854.1-201ENST00000413236 615 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 UBE2V1P10-201ENST00000414685 269 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL359633.1-201ENST00000421403 310 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ETF1P1-206ENST00000427296 984 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL031313.1-201ENST00000448435 256 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 SSR3-206ENST00000476217 807 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 PFN1P8-201ENST00000497012 543 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC010409.2-201ENST00000505780 478 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 RNU6-964P-201ENST00000516524 69 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC010376.1-201ENST00000522101 334 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AP003080.1-202ENST00000526526 915 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC118942.1-201ENST00000529674 1035 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AP006587.5-201ENST00000532033 739 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC006120.1-201ENST00000579375 546 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL353778.1-201ENST00000603149 408 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC121247.2-201ENST00000604776 136 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC091768.1-201ENST00000609258 930 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL121782.1-201ENST00000611242 413 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC087241.4-201ENST00000612441 480 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC245407.2-201ENST00000614199 451 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC105227.2-201ENST00000615075 605 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 CNTNAP3P1-201ENST00000616657 906 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AL669942.2-201ENST00000620352 697 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ELL2P3-201ENST00000457883 1602 ntBASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 GAPDHP15-201ENST00000398586 975 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 NPM1P37-201ENST00000403105 874 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 OR2W4P-201ENST00000406496 926 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL662791.3-201ENST00000413771 776 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 BX664727.1-201ENST00000416024 466 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 RPS24P7-201ENST00000416921 246 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 NPM1P33-201ENST00000438918 872 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC009518.3-201ENST00000438972 253 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL354714.5-201ENST00000450131 590 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 TVP23CP1-201ENST00000450317 639 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL359385.1-201ENST00000456509 365 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC025271.1-201ENST00000485045 429 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC117395.1-201ENST00000487390 403 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 RN7SL776P-201ENST00000493390 268 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL135933.1-201ENST00000498657 802 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 MRPS36P3-201ENST00000519284 130 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AP001804.1-201ENST00000526868 919 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 HNRNPCP8-201ENST00000528764 888 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 SSU72P6-201ENST00000532644 488 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 LDHC-204ENST00000536880 957 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC090115.2-201ENST00000548060 883 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AC023161.2-201ENST00000551218 780 ntBASIC7.75□□□□□ -1.17
CCDC39Q9UFE4 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms