Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC006600.2-201ENST00000624834 2506 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 RNA5SP279-201ENST00000365513 117 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 RN7SKP86-201ENST00000410454 332 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 HMGA1P8-201ENST00000414130 321 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AL035422.1-201ENST00000414193 397 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC092865.3-201ENST00000425390 1026 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC108479.1-201ENST00000431142 427 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 IGLV3-4-201ENST00000432300 244 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 PSMD10P2-201ENST00000432890 672 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC005165.2-201ENST00000466070 380 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 USP9YP2-201ENST00000504503 1000 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 NPM1P21-201ENST00000513394 762 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 USP9YP1-201ENST00000513521 1002 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 OR4A40P-201ENST00000533878 948 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 ADAM3B-201ENST00000569937 840 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 OR1E3-201ENST00000575608 948 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AP005136.2-201ENST00000583253 1049 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC010487.1-201ENST00000594408 1172 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 SMIM12P1-201ENST00000603004 274 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AP001823.1-201ENST00000604056 1003 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 uc_338.31-201ENST00000615595 186 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 AL137067.2-201ENST00000621202 131 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 CCNT2P1-201ENST00000423082 1315 ntBASIC5.42□□□□□ -1.54
SKA3Q8IX90 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SKA3Q8IX90 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SKA3Q8IX90 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC024587.1-201ENST00000505925 2157 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AL359091.1-201ENST00000449048 1734 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC011416.1-201ENST00000514947 1732 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 RN7SKP77-201ENST00000363261 353 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 RN7SKP81-201ENST00000365603 331 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 RN7SKP108-201ENST00000411367 328 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC079922.1-201ENST00000443291 359 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC010240.2-201ENST00000445363 1205 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 RBMY2AP-201ENST00000445405 1157 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 TIMM8BP2-201ENST00000445940 251 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 EEF1B2P3-201ENST00000447718 678 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 RBMY2CP-201ENST00000448575 1157 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 RBMY2DP-202ENST00000448881 1157 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AP002453.1-201ENST00000492327 668 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AL117692.1-201ENST00000494283 713 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC108103.1-201ENST00000511286 446 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 OR7E158P-201ENST00000524483 910 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 150.1 ms