Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX3P41225 AP001437.1-201ENST00000608783 456 ntBASIC5.71□□□□□ -1.5
SOX3P41225 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.71□□□□□ -1.5
SOX3P41225 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.71□□□□□ -1.5
SOX3P41225 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX3P41225 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SOX3P41225 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX3P41225 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX3P41225 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX3P41225 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX3P41225 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 AC024651.2-201ENST00000562480 2098 ntBASIC5.7□□□□□ -1.5
SOX3P41225 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX3P41225 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX3P41225 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SOX3P41225 COX6B1P3-201ENST00000312310 260 ntBASIC5.7□□□□□ -1.5
SOX3P41225 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SOX3P41225 SNORA21-201ENST00000362423 132 ntBASIC5.7□□□□□ -1.5
SOX3P41225 RNA5SP514-201ENST00000363717 111 ntBASIC5.7□□□□□ -1.5
SOX3P41225 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.7□□□□□ -1.5
SOX3P41225 SNORA51.9-201ENST00000384295 124 ntBASIC5.7□□□□□ -1.5
SOX3P41225 RNU11-6P-201ENST00000391127 133 ntBASIC5.7□□□□□ -1.5
SOX3P41225 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SOX3P41225 RPL7P58-201ENST00000402913 758 ntBASIC5.7□□□□□ -1.5
SOX3P41225 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 RNA5SP156-201ENST00000410250 110 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.7□□□□□ -1.5
SOX3P41225 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX3P41225 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.7□□□□□ -1.5
SOX3P41225 NFYAP1-201ENST00000431953 972 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AC023141.3-201ENST00000436698 278 ntBASIC5.7□□□□□ -1.5
SOX3P41225 GAPDHP23-201ENST00000444823 993 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AC002553.3-201ENST00000453002 341 ntBASIC5.7□□□□□ -1.5
SOX3P41225 RPS27AP3-201ENST00000453803 454 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.7□□□□□ -1.5
SOX3P41225 RNU6-775P-201ENST00000459318 96 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AC068228.1-201ENST00000461723 211 ntBASIC5.7□□□□□ -1.5
SOX3P41225 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.7□□□□□ -1.5
SOX3P41225 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX3P41225 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.7□□□□□ -1.5
SOX3P41225 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX3P41225 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX3P41225 AC090888.3-201ENST00000558917 509 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 AC092332.1-201ENST00000563684 829 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.7□□□□□ -1.5
SOX3P41225 AC079315.1-201ENST00000602952 623 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AC092266.1-201ENST00000610958 165 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AC004801.6-201ENST00000616571 978 ntBASIC5.7□□□□□ -1.5
SOX3P41225 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.7□□□□□ -1.5
SOX3P41225 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 AC093225.1-201ENST00000506867 1408 ntBASIC5.7□□□□□ -1.5
SOX3P41225 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SOX3P41225 AC092692.1-201ENST00000623625 2595 ntBASIC5.7□□□□□ -1.5
SOX3P41225 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX3P41225 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SOX3P41225 AC009135.2-201ENST00000624136 1768 ntBASIC5.7□□□□□ -1.5
SOX3P41225 AP001541.1-201ENST00000623322 1904 ntBASIC5.7□□□□□ -1.5
SOX3P41225 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX3P41225 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SOX3P41225 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 LYARP1-201ENST00000436977 1501 ntBASIC5.69□□□□□ -1.5
SOX3P41225 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX3P41225 AL354854.1-201ENST00000455940 1363 ntBASIC5.69□□□□□ -1.5
SOX3P41225 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SOX3P41225 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SOX3P41225 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 RNU1-134P-201ENST00000362935 165 ntBASIC5.69□□□□□ -1.5
SOX3P41225 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX3P41225 AL132875.1-201ENST00000403623 949 ntBASIC5.69□□□□□ -1.5
SOX3P41225 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SOX3P41225 RPS7P8-201ENST00000418311 581 ntBASIC5.69□□□□□ -1.5
SOX3P41225 AC015977.1-201ENST00000418887 292 ntBASIC5.69□□□□□ -1.5
SOX3P41225 RFESDP1-201ENST00000422350 461 ntBASIC5.69□□□□□ -1.5
SOX3P41225 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX3P41225 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SOX3P41225 AL353662.1-201ENST00000439099 327 ntBASIC5.69□□□□□ -1.5
SOX3P41225 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.69□□□□□ -1.5
SOX3P41225 AC098847.1-201ENST00000473094 348 ntBASIC5.69□□□□□ -1.5
SOX3P41225 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX3P41225 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX3P41225 RBBP4P1-201ENST00000502424 1276 ntBASIC5.69□□□□□ -1.5
SOX3P41225 AL158068.1-201ENST00000506116 616 ntBASIC5.69□□□□□ -1.5
SOX3P41225 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.69□□□□□ -1.5
SOX3P41225 CR383658.1-201ENST00000514609 734 ntBASIC5.69□□□□□ -1.5
SOX3P41225 IGKV3D-25-201ENST00000519599 235 ntBASIC5.69□□□□□ -1.5
SOX3P41225 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX3P41225 AC021269.1-201ENST00000526860 705 ntBASIC5.69□□□□□ -1.5
SOX3P41225 RPA2P3-201ENST00000533268 770 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms