Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORA21-201ENST00000362423 132 ntBASIC6.07□□□□□ -1.44
MSH3P20585 RNU1-134P-201ENST00000362935 165 ntBASIC6.07□□□□□ -1.44
MSH3P20585 RNA5SP375-201ENST00000362975 119 ntBASIC6.07□□□□□ -1.44
MSH3P20585 RN7SKP187-201ENST00000365536 330 ntBASIC6.07□□□□□ -1.44
MSH3P20585 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 RPL35AP31-201ENST00000418340 337 ntBASIC6.07□□□□□ -1.44
MSH3P20585 PPP2R2DP1-201ENST00000420526 637 ntBASIC6.07□□□□□ -1.44
MSH3P20585 RPSAP65-201ENST00000429660 595 ntBASIC6.07□□□□□ -1.44
MSH3P20585 DNAJC19P5-201ENST00000443295 316 ntBASIC6.07□□□□□ -1.44
MSH3P20585 PPIAP7-201ENST00000454070 489 ntBASIC6.07□□□□□ -1.44
MSH3P20585 AC009963.3-201ENST00000458090 486 ntBASIC6.07□□□□□ -1.44
MSH3P20585 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 AL035690.1-201ENST00000490892 383 ntBASIC6.07□□□□□ -1.44
MSH3P20585 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 AC011853.1-201ENST00000518911 454 ntBASIC6.07□□□□□ -1.44
MSH3P20585 AP000620.1-201ENST00000527147 504 ntBASIC6.07□□□□□ -1.44
MSH3P20585 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.07□□□□□ -1.44
MSH3P20585 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC6.07□□□□□ -1.44
MSH3P20585 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC6.07□□□□□ -1.44
MSH3P20585 AC002310.3-201ENST00000569728 723 ntBASIC6.07□□□□□ -1.44
MSH3P20585 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 MIR4701-201ENST00000583094 63 ntBASIC6.07□□□□□ -1.44
MSH3P20585 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC6.07□□□□□ -1.44
MSH3P20585 AC073333.2-201ENST00000603589 769 ntBASIC6.07□□□□□ -1.44
MSH3P20585 AC124916.2-201ENST00000604416 224 ntBASIC6.07□□□□□ -1.44
MSH3P20585 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.07□□□□□ -1.44
MSH3P20585 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 AP002512.4-202ENST00000641599 4530 ntBASIC6.07□□□□□ -1.44
MSH3P20585 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSH3P20585 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.07□□□□□ -1.44
MSH3P20585 HSPD1P9-201ENST00000420325 1636 ntBASIC6.07□□□□□ -1.44
MSH3P20585 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.07□□□□□ -1.44
MSH3P20585 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
MSH3P20585 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 AC099654.3-201ENST00000447087 1546 ntBASIC6.06□□□□□ -1.44
MSH3P20585 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH3P20585 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSH3P20585 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.06□□□□□ -1.44
MSH3P20585 RPS26P38-201ENST00000414476 348 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH3P20585 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH3P20585 SEPT14P12-201ENST00000442280 560 ntBASIC6.06□□□□□ -1.44
MSH3P20585 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH3P20585 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH3P20585 AL445687.2-201ENST00000458156 728 ntBASIC6.06□□□□□ -1.44
MSH3P20585 RN7SL352P-201ENST00000466002 277 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AC007688.1-201ENST00000475592 759 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH3P20585 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH3P20585 OR7E99P-201ENST00000505750 922 ntBASIC6.06□□□□□ -1.44
MSH3P20585 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH3P20585 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.06□□□□□ -1.44
MSH3P20585 CR383658.1-201ENST00000514609 734 ntBASIC6.06□□□□□ -1.44
MSH3P20585 Vault.2-201ENST00000516519 98 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AC009879.1-201ENST00000520029 839 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AC026616.1-201ENST00000523157 525 ntBASIC6.06□□□□□ -1.44
MSH3P20585 OR5D2P-201ENST00000524390 911 ntBASIC6.06□□□□□ -1.44
MSH3P20585 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.06□□□□□ -1.44
MSH3P20585 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.06□□□□□ -1.44
MSH3P20585 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.06□□□□□ -1.44
MSH3P20585 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.06□□□□□ -1.44
MSH3P20585 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 RNU4ATAC-201ENST00000580972 127 ntBASIC6.06□□□□□ -1.44
MSH3P20585 RN7SL261P-201ENST00000613441 282 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AL512652.1-201ENST00000619006 500 ntBASIC6.06□□□□□ -1.44
MSH3P20585 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
MSH3P20585 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSH3P20585 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
MSH3P20585 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.06□□□□□ -1.44
MSH3P20585 AC123769.1-201ENST00000530992 3192 ntBASIC6.06□□□□□ -1.44
MSH3P20585 AC022325.1-201ENST00000502748 2199 ntBASIC6.06□□□□□ -1.44
MSH3P20585 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
MSH3P20585 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.06□□□□□ -1.44
MSH3P20585 AC114876.1-201ENST00000490962 1366 ntBASIC6.06□□□□□ -1.44
MSH3P20585 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.06□□□□□ -1.44
MSH3P20585 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
MSH3P20585 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSH3P20585 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.05□□□□□ -1.44
MSH3P20585 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.05□□□□□ -1.44
MSH3P20585 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.05□□□□□ -1.44
MSH3P20585 RPL12P12-201ENST00000424633 501 ntBASIC6.05□□□□□ -1.44
MSH3P20585 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms