Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ELOCP3-201ENST00000439303 348 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC004815.1-201ENST00000484185 331 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 MIR4505-201ENST00000582238 73 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC016252.1-201ENST00000609721 474 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC026951.1-201ENST00000559530 2459 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 SALL4P7-201ENST00000555779 3120 ntBASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 RNA5SP507-201ENST00000363603 121 ntBASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 AC016027.4-201ENST00000450866 277 ntBASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 RNA5SP400-201ENST00000517155 111 ntBASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 PCNAP4-201ENST00000532690 730 ntBASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 ASB8-202ENST00000535055 657 ntTSL 2 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 METTL15-211ENST00000634762 718 ntTSL 5 BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 CDY5P-201ENST00000411487 1580 ntBASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 CDY9P-201ENST00000451397 1580 ntBASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SHROOM4Q9ULL8 AL731556.1-201ENST00000394628 3711 ntBASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 CFL1P1-202ENST00000432948 411 ntBASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 RPS17P15-201ENST00000475609 349 ntBASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 AC105036.1-201ENST00000566222 271 ntBASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC11.42□□□□□ -0.58
SHROOM4Q9ULL8 AC011369.2-201ENST00000624423 1567 ntBASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 RN7SKP77-201ENST00000363261 353 ntBASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 OR2AT2P-201ENST00000413438 905 ntBASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 AC024451.1-201ENST00000508013 779 ntBASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 HAUS8P1-201ENST00000549005 542 ntBASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 AC007204.2-201ENST00000615022 616 ntBASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
SHROOM4Q9ULL8 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 RNA5SP234-201ENST00000363916 119 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 HMGB1P20-201ENST00000402555 677 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 SNRPEP6-201ENST00000407465 277 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 RPS15AP30-201ENST00000420976 390 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC092017.2-201ENST00000427600 362 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC023245.1-201ENST00000468501 517 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC105420.1-201ENST00000504389 582 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 OR5M14P-201ENST00000506803 618 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC11.4□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms